EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0017880 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 7579 bases
Position: chr10:83533827-83541405
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0026640	RRM_1	PF00076.22	5.1e-26	1	1
MGP_C57BL6NJ_P0026642	RRM_1	PF00076.22	1.2e-25	1	1
MGP_C57BL6NJ_P0026641	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0026642	-	831	-	MGP_C57BL6NJ_P0026642	168 (aa)	-	-
MGP_C57BL6NJ_T0026643	-	376	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026640	-	423	XM_006513164	MGP_C57BL6NJ_P0026640	108 (aa)	XP_006513227	P60824
MGP_C57BL6NJ_T0026641	-	1321	-	MGP_C57BL6NJ_P0026641	172 (aa)	-	-
MGP_C57BL6NJ_T0026646	-	593	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026644	-	912	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026645	-	894	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0017880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0017880's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0017880	Cirbp	82	33.333	MGP_C57BL6NJ_G0033826	Elavl1	75	33.333
MGP_C57BL6NJ_G0017880	Cirbp	79	37.500	MGP_C57BL6NJ_G0034964	Elavl3	65	37.500
MGP_C57BL6NJ_G0017880	Cirbp	78	40.476	MGP_C57BL6NJ_G0027375	Rbm38	74	38.043
MGP_C57BL6NJ_G0017880	Cirbp	84	31.868	MGP_C57BL6NJ_G0027236	Srsf6	61	31.868
MGP_C57BL6NJ_G0017880	Cirbp	80	75.581	MGP_C57BL6NJ_G0036039	Rbm3	69	72.165
MGP_C57BL6NJ_G0017880	Cirbp	70	44.737	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	50	44.737
MGP_C57BL6NJ_G0017880	Cirbp	80	33.721	MGP_C57BL6NJ_G0023861	Srsf3	51	32.955
MGP_C57BL6NJ_G0017880	Cirbp	94	38.614	MGP_C57BL6NJ_G0021011	Hnrnpa0	56	43.421
MGP_C57BL6NJ_G0017880	Cirbp	94	39.759	MGP_C57BL6NJ_G0027257	Pabpc1l	56	39.759
MGP_C57BL6NJ_G0017880	Cirbp	88	43.243	MGP_C57BL6NJ_G0019317	Msi2	61	41.429
MGP_C57BL6NJ_G0017880	Cirbp	76	37.500	MGP_C57BL6NJ_G0028865	Elavl2	64	37.500
MGP_C57BL6NJ_G0017880	Cirbp	84	38.889	MGP_C57BL6NJ_G0028998	Elavl4	70	38.889
MGP_C57BL6NJ_G0017880	Cirbp	85	38.043	MGP_C57BL6NJ_G0023141	Ncbp2	54	36.471
MGP_C57BL6NJ_G0017880	Cirbp	79	63.529	MGP_C57BL6NJ_G0036247	Rbmx	83	63.529
MGP_C57BL6NJ_G0017880	Cirbp	92	34.737	MGP_C57BL6NJ_G0028025	Sf3b4	59	34.783
MGP_C57BL6NJ_G0017880	Cirbp	92	42.105	MGP_C57BL6NJ_G0017886	Dazap1	74	47.273
MGP_C57BL6NJ_G0017880	Cirbp	91	35.714	MGP_C57BL6NJ_G0031411	Tia1	80	37.778
MGP_C57BL6NJ_G0017880	Cirbp	68	34.247	MGP_C57BL6NJ_G0021799	Pspc1	69	41.304
MGP_C57BL6NJ_G0017880	Cirbp	85	40.244	MGP_C57BL6NJ_G0033576	Tial1	67	40.244
MGP_C57BL6NJ_G0017880	Cirbp	73	36.709	MGP_C57BL6NJ_G0030213	Hnrnpdl	54	36.709
MGP_C57BL6NJ_G0017880	Cirbp	83	37.755	MGP_C57BL6NJ_G0030211	Hnrnpd	84	36.559
MGP_C57BL6NJ_G0017880	Cirbp	87	40.351	MGP_C57BL6NJ_G0030399	Msi1	51	38.983
MGP_C57BL6NJ_G0017880	Cirbp	80	32.558	MGP_C57BL6NJ_G0025747	Celf2	82	33.333