EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0018153 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf6
Alias: 4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 59859 bases
Position: chr10:124378856-124438714
Accession: 1913948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0027615	RRM_1	PF00076.22	2.1e-06	1	1
MGP_C57BL6NJ_P0027619	RRM_1	PF00076.22	2.1e-06	1	1
MGP_C57BL6NJ_P0027616	RRM_1	PF00076.22	2.1e-06	1	1
MGP_C57BL6NJ_P0027617	RRM_1	PF00076.22	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0027622	-	377	-	MGP_C57BL6NJ_P0027622	91 (aa)	-	-
MGP_C57BL6NJ_T0027621	-	2749	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0027620	-	449	-	MGP_C57BL6NJ_P0027620	38 (aa)	-	-
MGP_C57BL6NJ_T0027618	-	717	-	MGP_C57BL6NJ_P0027618	182 (aa)	-	-
MGP_C57BL6NJ_T0027619	-	3819	-	MGP_C57BL6NJ_P0027619	551 (aa)	-	-
MGP_C57BL6NJ_T0027616	-	2200	-	MGP_C57BL6NJ_P0027616	552 (aa)	-	-
MGP_C57BL6NJ_T0027617	-	2227	-	MGP_C57BL6NJ_P0027617	588 (aa)	-	-
MGP_C57BL6NJ_T0027615	-	6526	XM_006513851	MGP_C57BL6NJ_P0027615	551 (aa)	XP_006513914	Q6NVF9

Gene Model

Click here to download MGP_C57BL6NJ_G0018153's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0018153's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018153	Cpsf6	65	55.385	MGP_C57BL6NJ_G0025263	Cpsf7	71	58.857