EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0018348 (Gene tree)
Gene ID: -
Gene Symbol: Patz1
Alias: 8430401L15Rik|AI447519|MAZR|Mazr|POZ-AT hook-zinc finger protein|Patz|Zfp278|Zfp278GN|mazr
Full Name: POZ (BTB) and AT hook containing zinc finger 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 24377 bases
Position: chr11:200136-224512
Accession: 1891832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0028124	zf-C2H2	PF00096.26	4e-26	1	5
MGP_C57BL6NJ_P0028124	zf-C2H2	PF00096.26	4e-26	2	5
MGP_C57BL6NJ_P0028124	zf-C2H2	PF00096.26	4e-26	3	5
MGP_C57BL6NJ_P0028124	zf-C2H2	PF00096.26	4e-26	4	5
MGP_C57BL6NJ_P0028124	zf-C2H2	PF00096.26	4e-26	5	5
MGP_C57BL6NJ_P0028125	zf-C2H2	PF00096.26	5.1e-20	1	4
MGP_C57BL6NJ_P0028125	zf-C2H2	PF00096.26	5.1e-20	2	4
MGP_C57BL6NJ_P0028125	zf-C2H2	PF00096.26	5.1e-20	3	4
MGP_C57BL6NJ_P0028125	zf-C2H2	PF00096.26	5.1e-20	4	4
MGP_C57BL6NJ_P0028126	zf-C2H2	PF00096.26	1.9e-16	1	3
MGP_C57BL6NJ_P0028126	zf-C2H2	PF00096.26	1.9e-16	2	3
MGP_C57BL6NJ_P0028126	zf-C2H2	PF00096.26	1.9e-16	3	3
MGP_C57BL6NJ_P0028123	zf-C2H2	PF00096.26	2.2e-15	1	3
MGP_C57BL6NJ_P0028123	zf-C2H2	PF00096.26	2.2e-15	2	3
MGP_C57BL6NJ_P0028123	zf-C2H2	PF00096.26	2.2e-15	3	3
MGP_C57BL6NJ_P0028124	zf-met	PF12874.7	3.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0028119	-	798	NR_045109	-	- (aa)	-	-
MGP_C57BL6NJ_T0028130	-	495	-	MGP_C57BL6NJ_P0028130	70 (aa)	-	-
MGP_C57BL6NJ_T0028129	-	652	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028128	-	456	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028121	-	844	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028120	-	1853	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028123	-	2930	-	MGP_C57BL6NJ_P0028123	537 (aa)	-	-
MGP_C57BL6NJ_T0028122	-	1904	-	MGP_C57BL6NJ_P0028122	102 (aa)	-	-
MGP_C57BL6NJ_T0028125	-	3118	-	MGP_C57BL6NJ_P0028125	641 (aa)	-	-
MGP_C57BL6NJ_T0028124	-	3702	-	MGP_C57BL6NJ_P0028124	687 (aa)	-	-
MGP_C57BL6NJ_T0028127	-	1249	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028126	-	3173	-	MGP_C57BL6NJ_P0028126	537 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018348	Patz1	88	36.232	MGP_C57BL6NJ_G0024402	Zbtb14	90	38.889