EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0018411 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 8854 bases
Position: chr11:3461027-3469880
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0028417	ResIII	PF04851.15	9.5e-07	1	1
MGP_C57BL6NJ_P0028417	DEAD	PF00270.29	7e-40	1	1
MGP_C57BL6NJ_P0028419	DEAD	PF00270.29	5.9e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0028419	-	764	-	MGP_C57BL6NJ_P0028419	237 (aa)	-	-
MGP_C57BL6NJ_T0028418	-	527	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028420	-	621	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028417	-	1956	XM_011243731	MGP_C57BL6NJ_P0028417	546 (aa)	XP_011242033	Q9D0R4

Gene Model

Click here to download MGP_C57BL6NJ_G0018411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0018411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018411	Ddx56	92	31.197	MGP_C57BL6NJ_G0031331	Gm8994	77	30.594
MGP_C57BL6NJ_G0018411	Ddx56	92	31.197	MGP_C57BL6NJ_G0031330	Gm5580	58	31.197
MGP_C57BL6NJ_G0018411	Ddx56	66	30.366	MGP_C57BL6NJ_G0036071	Ddx3x	52	30.000
MGP_C57BL6NJ_G0018411	Ddx56	99	35.887	MGP_C57BL6NJ_G0031854	Ddx47	86	38.889
MGP_C57BL6NJ_G0018411	Ddx56	95	31.855	MGP_C57BL6NJ_G0034625	Ddx19a	73	30.175
MGP_C57BL6NJ_G0018411	Ddx56	95	31.855	MGP_C57BL6NJ_G0034626	Ddx19b	74	30.151
MGP_C57BL6NJ_G0018411	Ddx56	66	30.789	MGP_C57BL6NJ_G0017321	D1Pas1	52	30.159
MGP_C57BL6NJ_G0018411	Ddx56	82	50.000	MGP_C57BL6NJ_G0019996	Ddx1	53	50.847
MGP_C57BL6NJ_G0018411	Ddx56	80	33.493	MGP_C57BL6NJ_G0019255	Ddx52	61	30.597
MGP_C57BL6NJ_G0018411	Ddx56	98	33.065	MGP_C57BL6NJ_G0027329	Ddx27	53	31.019
MGP_C57BL6NJ_G0018411	Ddx56	97	30.041	MGP_C57BL6NJ_G0018937	Eif4a1	52	30.435
MGP_C57BL6NJ_G0018411	Ddx56	91	30.396	MGP_C57BL6NJ_G0023094	Eif4a2	81	40.984
MGP_C57BL6NJ_G0018411	Ddx56	61	32.051	MGP_C57BL6NJ_G0034335	Ddx39	74	34.969