EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0018457 (Gene tree)
Gene ID: -
Gene Symbol: Rab1a
Alias: ECO:0000313|MGI:MGI:97842},GN Rab1A|Gtbp|Rab-1|Rab1|Rab1 {ECO:0000313|EMBL:EDL07829.1,GN ECO:0000313|Ensembl:ENSMUSP00000127330|Ypt1|mKIAA3012|ras-related YPT1 protein
Full Name: RAB1A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 27960 bases
Position: chr11:18507970-18535929
Accession: 97842
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0028610	MMR_HSR1	PF01926.23	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0028608	-	962	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028609	-	702	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0028610	-	2585	-	MGP_C57BL6NJ_P0028610	205 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0018457's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0018457's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018457	Rab1a	68	30.496	MGP_C57BL6NJ_G0025625	Arl3	72	30.496
MGP_C57BL6NJ_G0018457	Rab1a	99	44.554	MGP_C57BL6NJ_G0026068	Rab14	97	47.619
MGP_C57BL6NJ_G0018457	Rab1a	97	46.465	MGP_C57BL6NJ_G0021694	Rab2b	92	46.465
MGP_C57BL6NJ_G0018457	Rab1a	82	50.296	MGP_C57BL6NJ_G0024393	Rab12	78	46.561
MGP_C57BL6NJ_G0018457	Rab1a	80	38.415	MGP_C57BL6NJ_G0031923	Kras	97	35.676
MGP_C57BL6NJ_G0018457	Rab1a	75	37.580	MGP_C57BL6NJ_G0022651	Rabl2	67	37.580
MGP_C57BL6NJ_G0018457	Rab1a	100	45.581	MGP_C57BL6NJ_G0023942	Rab11b	98	53.425
MGP_C57BL6NJ_G0018457	Rab1a	79	32.298	MGP_C57BL6NJ_G0030553	Ran	93	32.298
MGP_C57BL6NJ_G0018457	Rab1a	76	38.994	MGP_C57BL6NJ_G0036753	Rab9	79	38.994
MGP_C57BL6NJ_G0018457	Rab1a	94	45.361	MGP_C57BL6NJ_G0024539	Rab18	93	45.361
MGP_C57BL6NJ_G0018457	Rab1a	95	33.175	MGP_C57BL6NJ_G0017745	Rab36	79	33.175
MGP_C57BL6NJ_G0018457	Rab1a	83	43.429	MGP_C57BL6NJ_G0027616	Rab33b	76	43.429
MGP_C57BL6NJ_G0018457	Rab1a	81	38.235	MGP_C57BL6NJ_G0031441	Rab7	98	39.583
MGP_C57BL6NJ_G0018457	Rab1a	81	34.337	MGP_C57BL6NJ_G0016293	Rab23	70	34.337
MGP_C57BL6NJ_G0018457	Rab1a	69	30.201	MGP_C57BL6NJ_G0019601	Arl4d	73	30.201
MGP_C57BL6NJ_G0018457	Rab1a	57	33.058	MGP_C57BL6NJ_G0025163	Arl2	61	33.058
MGP_C57BL6NJ_G0018457	Rab1a	94	38.384	MGP_C57BL6NJ_G0033057	Rab6a	94	38.384
MGP_C57BL6NJ_G0018457	Rab1a	99	53.960	MGP_C57BL6NJ_G0030405	Rab35	100	53.960
MGP_C57BL6NJ_G0018457	Rab1a	81	45.238	MGP_C57BL6NJ_G0019764	Rab37	78	45.238
MGP_C57BL6NJ_G0018457	Rab1a	81	50.602	MGP_C57BL6NJ_G0032997	Rab30	82	50.602
MGP_C57BL6NJ_G0018457	Rab1a	99	92.079	MGP_C57BL6NJ_G0025106	Rab1b	100	92.079
MGP_C57BL6NJ_G0018457	Rab1a	58	34.454	MGP_C57BL6NJ_G0016921	Arl8a	62	34.454
MGP_C57BL6NJ_G0018457	Rab1a	94	36.410	MGP_C57BL6NJ_G0035686	Rab6b	94	36.410
MGP_C57BL6NJ_G0018457	Rab1a	85	52.299	MGP_C57BL6NJ_G0035435	Rab11a	100	50.000
MGP_C57BL6NJ_G0018457	Rab1a	80	38.415	MGP_C57BL6NJ_G0028104	Nras	96	39.041
MGP_C57BL6NJ_G0018457	Rab1a	82	45.833	MGP_C57BL6NJ_G0027819	Rab25	79	45.833
MGP_C57BL6NJ_G0018457	Rab1a	62	31.061	MGP_C57BL6NJ_G0027713	Arl14	65	31.061
MGP_C57BL6NJ_G0018457	Rab1a	95	43.814	MGP_C57BL6NJ_G0024293	Rab5a	90	43.814
MGP_C57BL6NJ_G0018457	Rab1a	95	43.590	MGP_C57BL6NJ_G0019558	Rab5c	89	43.590
MGP_C57BL6NJ_G0018457	Rab1a	90	48.108	MGP_C57BL6NJ_G0028452	Rab2a	99	45.238
MGP_C57BL6NJ_G0018457	Rab1a	84	35.028	MGP_C57BL6NJ_G0033708	Hras	93	35.028
MGP_C57BL6NJ_G0018457	Rab1a	80	50.909	MGP_C57BL6NJ_G0020255	Rab15	78	50.909
MGP_C57BL6NJ_G0018457	Rab1a	94	43.434	MGP_C57BL6NJ_G0036192	Rab33a	83	43.434
MGP_C57BL6NJ_G0018457	Rab1a	57	31.092	MGP_C57BL6NJ_G0016684	Arl4c	61	31.092
MGP_C57BL6NJ_G0018457	Rab1a	77	40.491	MGP_C57BL6NJ_G0019159	Rab34	62	40.491
MGP_C57BL6NJ_G0018457	Rab1a	79	31.902	MGP_C57BL6NJ_G0032029	Rasl2-9	73	31.902
MGP_C57BL6NJ_G0018457	Rab1a	76	38.994	MGP_C57BL6NJ_G0036600	Rab9b	79	38.994
MGP_C57BL6NJ_G0018457	Rab1a	80	36.527	MGP_C57BL6NJ_G0035663	Mras	80	36.527
MGP_C57BL6NJ_G0018457	Rab1a	95	38.660	MGP_C57BL6NJ_G0027382	Rab22a	97	38.660
MGP_C57BL6NJ_G0018457	Rab1a	57	31.933	MGP_C57BL6NJ_G0020090	Arl4a	59	31.933
MGP_C57BL6NJ_G0018457	Rab1a	57	32.203	MGP_C57BL6NJ_G0031541	Arl8b	61	32.203
MGP_C57BL6NJ_G0018457	Rab1a	82	32.544	MGP_C57BL6NJ_G0029786	Rheb	91	32.544
MGP_C57BL6NJ_G0018457	Rab1a	90	39.785	MGP_C57BL6NJ_G0024384	Rab31	95	39.785
MGP_C57BL6NJ_G0018457	Rab1a	86	43.820	MGP_C57BL6NJ_G0036361	Rab39b	84	43.820