EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0018638 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 10555 bases
Position: chr11:51022181-51032735
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0029301	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_C57BL6NJ_P0029302	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_C57BL6NJ_P0029307	zf-RNPHF	PF08080.12	1.5e-22	1	1
MGP_C57BL6NJ_P0029301	RRM_1	PF00076.22	2.1e-32	1	3
MGP_C57BL6NJ_P0029301	RRM_1	PF00076.22	2.1e-32	2	3
MGP_C57BL6NJ_P0029301	RRM_1	PF00076.22	2.1e-32	3	3
MGP_C57BL6NJ_P0029302	RRM_1	PF00076.22	2.1e-32	1	3
MGP_C57BL6NJ_P0029302	RRM_1	PF00076.22	2.1e-32	2	3
MGP_C57BL6NJ_P0029302	RRM_1	PF00076.22	2.1e-32	3	3
MGP_C57BL6NJ_P0029307	RRM_1	PF00076.22	2.6e-32	1	3
MGP_C57BL6NJ_P0029307	RRM_1	PF00076.22	2.6e-32	2	3
MGP_C57BL6NJ_P0029307	RRM_1	PF00076.22	2.6e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0029316	-	159	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029308	-	1116	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029309	-	582	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029306	-	870	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029307	-	1948	-	MGP_C57BL6NJ_P0029307	472 (aa)	-	-
MGP_C57BL6NJ_T0029304	-	581	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029305	-	4002	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029302	-	2047	-	MGP_C57BL6NJ_P0029302	449 (aa)	-	-
MGP_C57BL6NJ_T0029303	-	4399	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029310	-	860	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029301	-	2249	XM_006533875	MGP_C57BL6NJ_P0029301	449 (aa)	XP_006533938	O35737
MGP_C57BL6NJ_T0029311	-	1724	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029315	-	163	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029313	-	582	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029314	-	763	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029312	-	832	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0029317	-	622	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018638	Hnrnph1	90	60.923	MGP_C57BL6NJ_G0017706	Hnrnph3	99	59.673
MGP_C57BL6NJ_G0018638	Hnrnph1	90	92.771	MGP_C57BL6NJ_G0027462	-	100	92.771
MGP_C57BL6NJ_G0018638	Hnrnph1	60	64.474	MGP_C57BL6NJ_G0030141	Grsf1	92	65.333