EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0018659 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 6746 bases
Position: chr11:52386850-52393595
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0029392	CBFNT	PF08143.11	3.2e-19	1	1
MGP_C57BL6NJ_P0029393	CBFNT	PF08143.11	3.8e-19	1	1
MGP_C57BL6NJ_P0029394	CBFNT	PF08143.11	4.2e-19	1	1
MGP_C57BL6NJ_P0029392	RRM_1	PF00076.22	6.4e-34	1	2
MGP_C57BL6NJ_P0029392	RRM_1	PF00076.22	6.4e-34	2	2
MGP_C57BL6NJ_P0029393	RRM_1	PF00076.22	8.5e-34	1	2
MGP_C57BL6NJ_P0029393	RRM_1	PF00076.22	8.5e-34	2	2
MGP_C57BL6NJ_P0029394	RRM_1	PF00076.22	1e-33	1	2
MGP_C57BL6NJ_P0029394	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0029394	-	1437	-	MGP_C57BL6NJ_P0029394	332 (aa)	-	-
MGP_C57BL6NJ_T0029393	-	2013	-	MGP_C57BL6NJ_P0029393	311 (aa)	-	-
MGP_C57BL6NJ_T0029392	-	2370	-	MGP_C57BL6NJ_P0029392	285 (aa)	-	Q99020

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018659	Hnrnpab	57	35.882	MGP_C57BL6NJ_G0021011	Hnrnpa0	58	35.882
MGP_C57BL6NJ_G0018659	Hnrnpab	79	40.800	MGP_C57BL6NJ_G0030399	Msi1	58	48.052
MGP_C57BL6NJ_G0018659	Hnrnpab	77	70.183	MGP_C57BL6NJ_G0030211	Hnrnpd	100	88.000
MGP_C57BL6NJ_G0018659	Hnrnpab	82	32.099	MGP_C57BL6NJ_G0029559	Tardbp	86	33.146
MGP_C57BL6NJ_G0018659	Hnrnpab	65	31.414	MGP_C57BL6NJ_G0035394	Celf6	66	32.500
MGP_C57BL6NJ_G0018659	Hnrnpab	82	58.419	MGP_C57BL6NJ_G0030213	Hnrnpdl	89	57.292
MGP_C57BL6NJ_G0018659	Hnrnpab	53	33.333	MGP_C57BL6NJ_G0033826	Elavl1	50	33.333
MGP_C57BL6NJ_G0018659	Hnrnpab	51	33.846	MGP_C57BL6NJ_G0020377	Slirp	73	33.846
MGP_C57BL6NJ_G0018659	Hnrnpab	67	40.351	MGP_C57BL6NJ_G0017886	Dazap1	99	40.588
MGP_C57BL6NJ_G0018659	Hnrnpab	64	37.368	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	61	38.068
MGP_C57BL6NJ_G0018659	Hnrnpab	72	52.000	MGP_C57BL6NJ_G0019317	Msi2	100	52.212