EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0018920 (Gene tree)
Gene ID: -
Gene Symbol: Chd3
Alias: 2600010P09Rik|AF020312|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 26407 bases
Position: chr11:71884049-71910455
Accession: 1344395
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0030407	ResIII	PF04851.15	3.5e-08	1	1
MGP_C57BL6NJ_P0030406	ResIII	PF04851.15	3.9e-08	1	1
MGP_C57BL6NJ_P0030405	ResIII	PF04851.15	4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0030403	-	2153	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0030407	-	5657	-	MGP_C57BL6NJ_P0030407	1885 (aa)	-	-
MGP_C57BL6NJ_T0030406	-	6051	-	MGP_C57BL6NJ_P0030406	2016 (aa)	-	-
MGP_C57BL6NJ_T0030405	-	7231	-	MGP_C57BL6NJ_P0030405	2050 (aa)	-	-
MGP_C57BL6NJ_T0030404	-	1882	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0030409	-	432	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0030408	-	747	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0030410	-	591	-	MGP_C57BL6NJ_P0030410	196 (aa)	-	-
MGP_C57BL6NJ_T0030411	-	453	-	MGP_C57BL6NJ_P0030411	151 (aa)	-	-
MGP_C57BL6NJ_T0030412	-	430	-	MGP_C57BL6NJ_P0030412	143 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0018920's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0018920	Chd3	91	80.841	MGP_C57BL6NJ_G0031719	Chd4	95	70.529
MGP_C57BL6NJ_G0018920	Chd3	95	71.160	MGP_C57BL6NJ_G0029611	Chd5	97	70.202