EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0019255 (Gene tree)
Gene ID: -
Gene Symbol: Ddx52
Alias: 2700029C06Rik|ROK1|Rok1
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 26204 bases
Position: chr11:87916740-87942943
Accession: 1925644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0031765	ResIII	PF04851.15	9.9e-06	1	1
MGP_C57BL6NJ_P0031765	DEAD	PF00270.29	5.4e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0031765	-	3194	-	MGP_C57BL6NJ_P0031765	598 (aa)	-	Q8K301
MGP_C57BL6NJ_T0031766	-	553	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0019255's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0019255's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0019255	Ddx52	69	34.135	MGP_C57BL6NJ_G0035558	Ddx43	63	34.135
MGP_C57BL6NJ_G0019255	Ddx52	59	32.676	MGP_C57BL6NJ_G0023094	Eif4a2	88	30.240
MGP_C57BL6NJ_G0019255	Ddx52	66	34.069	MGP_C57BL6NJ_G0021324	Ddx4	57	34.069
MGP_C57BL6NJ_G0019255	Ddx52	68	30.456	MGP_C57BL6NJ_G0022487	Ddx17	62	30.843
MGP_C57BL6NJ_G0019255	Ddx52	62	30.326	MGP_C57BL6NJ_G0030529	Ddx55	61	30.326
MGP_C57BL6NJ_G0019255	Ddx52	58	33.428	MGP_C57BL6NJ_G0031854	Ddx47	83	32.011
MGP_C57BL6NJ_G0019255	Ddx52	58	30.900	MGP_C57BL6NJ_G0030320	Ddx51	64	30.900
MGP_C57BL6NJ_G0019255	Ddx52	60	41.071	MGP_C57BL6NJ_G0019996	Ddx1	55	41.071
MGP_C57BL6NJ_G0019255	Ddx52	68	30.095	MGP_C57BL6NJ_G0016816	Ddx18	55	30.971
MGP_C57BL6NJ_G0019255	Ddx52	60	31.944	MGP_C57BL6NJ_G0018937	Eif4a1	82	31.622
MGP_C57BL6NJ_G0019255	Ddx52	61	30.081	MGP_C57BL6NJ_G0034195	Ddx49	76	30.081
MGP_C57BL6NJ_G0019255	Ddx52	66	32.530	MGP_C57BL6NJ_G0017321	D1Pas1	61	32.530
MGP_C57BL6NJ_G0019255	Ddx52	70	30.222	MGP_C57BL6NJ_G0022715	Ddx23	54	30.243
MGP_C57BL6NJ_G0019255	Ddx52	66	31.204	MGP_C57BL6NJ_G0019705	Ddx5	62	35.345
MGP_C57BL6NJ_G0019255	Ddx52	70	32.045	MGP_C57BL6NJ_G0036071	Ddx3x	61	32.530
MGP_C57BL6NJ_G0019255	Ddx52	61	30.597	MGP_C57BL6NJ_G0018411	Ddx56	80	33.493
MGP_C57BL6NJ_G0019255	Ddx52	68	30.733	MGP_C57BL6NJ_G0020986	Ddx41	65	31.026
MGP_C57BL6NJ_G0019255	Ddx52	73	32.648	MGP_C57BL6NJ_G0016945	Ddx59	64	33.741