EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0019312 (Gene tree)
Gene ID: -
Gene Symbol: Srsf1
Alias: 1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 6383 bases
Position: chr11:92454823-92461205
Accession: 98283
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0032024	RRM_1	PF00076.22	6.2e-34	1	2
MGP_C57BL6NJ_P0032024	RRM_1	PF00076.22	6.2e-34	2	2
MGP_C57BL6NJ_P0032023	RRM_1	PF00076.22	2.4e-33	1	2
MGP_C57BL6NJ_P0032023	RRM_1	PF00076.22	2.4e-33	2	2
MGP_C57BL6NJ_P0032026	RRM_1	PF00076.22	2.6e-33	1	2
MGP_C57BL6NJ_P0032026	RRM_1	PF00076.22	2.6e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0032027	-	896	-	MGP_C57BL6NJ_P0032027	105 (aa)	-	-
MGP_C57BL6NJ_T0032026	-	1209	-	MGP_C57BL6NJ_P0032026	253 (aa)	-	-
MGP_C57BL6NJ_T0032025	-	645	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0032024	-	2948	-	MGP_C57BL6NJ_P0032024	201 (aa)	-	-
MGP_C57BL6NJ_T0032023	-	5362	-	MGP_C57BL6NJ_P0032023	248 (aa)	-	Q6PDM2
MGP_C57BL6NJ_T0032029	-	759	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0032028	-	401	-	MGP_C57BL6NJ_P0032028	57 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0019312's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0019312's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0019312	Srsf1	79	79.762	MGP_C57BL6NJ_G0030395	Srsf9	78	70.330
MGP_C57BL6NJ_G0019312	Srsf1	80	46.988	MGP_C57BL6NJ_G0020284	Srsf5	96	51.020
MGP_C57BL6NJ_G0019312	Srsf1	82	42.857	MGP_C57BL6NJ_G0027236	Srsf6	58	40.670