EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0019317 (Gene tree)
Gene ID: -
Gene Symbol: Msi2
Alias: 1700105C15Rik|AI451722|AI563628|AW489193|Msi2h|Musashi2|msi2h
Full Name: musashi RNA-binding protein 2
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 400836 bases
Position: chr11:92797334-93198169
Accession: 1923876
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0032046	RRM_1	PF00076.22	6.3e-34	1	2
MGP_C57BL6NJ_P0032046	RRM_1	PF00076.22	6.3e-34	2	2
MGP_C57BL6NJ_P0032047	RRM_1	PF00076.22	6.6e-34	1	2
MGP_C57BL6NJ_P0032047	RRM_1	PF00076.22	6.6e-34	2	2
MGP_C57BL6NJ_P0032050	RRM_1	PF00076.22	3.9e-22	1	1
MGP_C57BL6NJ_P0032051	RRM_1	PF00076.22	3.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0032047	-	1855	-	MGP_C57BL6NJ_P0032047	346 (aa)	-	-
MGP_C57BL6NJ_T0032046	-	6377	XM_006534432	MGP_C57BL6NJ_P0032046	328 (aa)	XP_006534495	Q920Q6
MGP_C57BL6NJ_T0032052	-	642	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0032050	-	405	-	MGP_C57BL6NJ_P0032050	113 (aa)	-	-
MGP_C57BL6NJ_T0032051	-	683	-	MGP_C57BL6NJ_P0032051	158 (aa)	-	-
MGP_C57BL6NJ_T0032049	-	2516	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0032048	-	1748	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0019317's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0019317's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0019317	Msi2	100	54.867	MGP_C57BL6NJ_G0030213	Hnrnpdl	78	41.634
MGP_C57BL6NJ_G0019317	Msi2	100	53.982	MGP_C57BL6NJ_G0030211	Hnrnpd	100	72.000
MGP_C57BL6NJ_G0019317	Msi2	61	42.857	MGP_C57BL6NJ_G0036039	Rbm3	93	43.243
MGP_C57BL6NJ_G0019317	Msi2	100	52.212	MGP_C57BL6NJ_G0018659	Hnrnpab	72	52.000
MGP_C57BL6NJ_G0019317	Msi2	88	47.525	MGP_C57BL6NJ_G0026275	Hnrnpa3	52	45.872
MGP_C57BL6NJ_G0019317	Msi2	100	35.398	MGP_C57BL6NJ_G0029559	Tardbp	79	31.818
MGP_C57BL6NJ_G0019317	Msi2	50	33.333	MGP_C57BL6NJ_G0016426	Boll	65	32.857
MGP_C57BL6NJ_G0019317	Msi2	61	41.429	MGP_C57BL6NJ_G0017880	Cirbp	88	43.243
MGP_C57BL6NJ_G0019317	Msi2	99	42.400	MGP_C57BL6NJ_G0017886	Dazap1	92	49.462
MGP_C57BL6NJ_G0019317	Msi2	86	33.562	MGP_C57BL6NJ_G0027375	Rbm38	70	38.095
MGP_C57BL6NJ_G0019317	Msi2	60	33.824	MGP_C57BL6NJ_G0020377	Slirp	70	33.824
MGP_C57BL6NJ_G0019317	Msi2	99	41.228	MGP_C57BL6NJ_G0021011	Hnrnpa0	59	41.989
MGP_C57BL6NJ_G0019317	Msi2	61	42.857	MGP_C57BL6NJ_G0036247	Rbmx	88	45.205
MGP_C57BL6NJ_G0019317	Msi2	100	90.323	MGP_C57BL6NJ_G0030399	Msi1	99	75.665
MGP_C57BL6NJ_G0019317	Msi2	84	30.208	MGP_C57BL6NJ_G0028998	Elavl4	78	30.088
MGP_C57BL6NJ_G0019317	Msi2	70	31.250	MGP_C57BL6NJ_G0028865	Elavl2	72	32.632
MGP_C57BL6NJ_G0019317	Msi2	100	44.348	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	56	48.193