EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0019558 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 23079 bases
Position: chr11:106694963-106718041
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0032857	MMR_HSR1	PF01926.23	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0032857	-	1915	XM_006532586	MGP_C57BL6NJ_P0032857	216 (aa)	XP_006532649	P35278
MGP_C57BL6NJ_T0032860	-	441	-	MGP_C57BL6NJ_P0032860	34 (aa)	-	-
MGP_C57BL6NJ_T0032858	-	1967	-	MGP_C57BL6NJ_P0032858	234 (aa)	-	-
MGP_C57BL6NJ_T0032859	-	412	-	MGP_C57BL6NJ_P0032859	83 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0019558's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0019558's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0019558	Rab5c	86	39.785	MGP_C57BL6NJ_G0026068	Rab14	89	40.741
MGP_C57BL6NJ_G0019558	Rab5c	89	34.848	MGP_C57BL6NJ_G0036753	Rab9	97	34.848
MGP_C57BL6NJ_G0019558	Rab5c	78	33.728	MGP_C57BL6NJ_G0030553	Ran	98	33.728
MGP_C57BL6NJ_G0019558	Rab5c	100	87.500	MGP_C57BL6NJ_G0024293	Rab5a	100	87.500
MGP_C57BL6NJ_G0019558	Rab5c	89	40.206	MGP_C57BL6NJ_G0021694	Rab2b	90	40.206
MGP_C57BL6NJ_G0019558	Rab5c	90	47.423	MGP_C57BL6NJ_G0027382	Rab22a	98	47.423
MGP_C57BL6NJ_G0019558	Rab5c	71	35.948	MGP_C57BL6NJ_G0022651	Rabl2	67	35.948
MGP_C57BL6NJ_G0019558	Rab5c	78	42.012	MGP_C57BL6NJ_G0032997	Rab30	83	42.012
MGP_C57BL6NJ_G0019558	Rab5c	89	36.318	MGP_C57BL6NJ_G0036192	Rab33a	85	36.318
MGP_C57BL6NJ_G0019558	Rab5c	81	44.000	MGP_C57BL6NJ_G0033057	Rab6a	84	44.000
MGP_C57BL6NJ_G0019558	Rab5c	86	38.806	MGP_C57BL6NJ_G0024393	Rab12	90	36.000
MGP_C57BL6NJ_G0019558	Rab5c	74	43.293	MGP_C57BL6NJ_G0031441	Rab7	90	47.727
MGP_C57BL6NJ_G0019558	Rab5c	81	31.250	MGP_C57BL6NJ_G0029786	Rheb	93	31.250
MGP_C57BL6NJ_G0019558	Rab5c	75	36.585	MGP_C57BL6NJ_G0036361	Rab39b	77	36.585
MGP_C57BL6NJ_G0019558	Rab5c	90	41.262	MGP_C57BL6NJ_G0035435	Rab11a	88	49.630
MGP_C57BL6NJ_G0019558	Rab5c	93	37.379	MGP_C57BL6NJ_G0027616	Rab33b	89	37.379
MGP_C57BL6NJ_G0019558	Rab5c	55	31.967	MGP_C57BL6NJ_G0031541	Arl8b	62	31.967
MGP_C57BL6NJ_G0019558	Rab5c	81	35.227	MGP_C57BL6NJ_G0016293	Rab23	74	35.227
MGP_C57BL6NJ_G0019558	Rab5c	78	32.544	MGP_C57BL6NJ_G0031923	Kras	98	30.102
MGP_C57BL6NJ_G0019558	Rab5c	91	46.939	MGP_C57BL6NJ_G0024384	Rab31	98	46.939
MGP_C57BL6NJ_G0019558	Rab5c	55	31.707	MGP_C57BL6NJ_G0016921	Arl8a	62	31.707
MGP_C57BL6NJ_G0019558	Rab5c	73	35.625	MGP_C57BL6NJ_G0017745	Rab36	60	35.625
MGP_C57BL6NJ_G0019558	Rab5c	83	30.000	MGP_C57BL6NJ_G0028104	Nras	99	33.333
MGP_C57BL6NJ_G0019558	Rab5c	89	35.859	MGP_C57BL6NJ_G0036600	Rab9b	97	35.859
MGP_C57BL6NJ_G0019558	Rab5c	89	44.330	MGP_C57BL6NJ_G0025106	Rab1b	96	44.330
MGP_C57BL6NJ_G0019558	Rab5c	90	38.974	MGP_C57BL6NJ_G0028452	Rab2a	92	38.974
MGP_C57BL6NJ_G0019558	Rab5c	89	37.113	MGP_C57BL6NJ_G0030405	Rab35	96	37.436
MGP_C57BL6NJ_G0019558	Rab5c	89	43.590	MGP_C57BL6NJ_G0018457	Rab1a	95	43.590
MGP_C57BL6NJ_G0019558	Rab5c	78	32.544	MGP_C57BL6NJ_G0032029	Rasl2-9	77	32.544
MGP_C57BL6NJ_G0019558	Rab5c	75	45.062	MGP_C57BL6NJ_G0024539	Rab18	78	45.062
MGP_C57BL6NJ_G0019558	Rab5c	89	41.089	MGP_C57BL6NJ_G0027819	Rab25	93	41.089
MGP_C57BL6NJ_G0019558	Rab5c	94	41.379	MGP_C57BL6NJ_G0035686	Rab6b	98	41.379
MGP_C57BL6NJ_G0019558	Rab5c	81	33.702	MGP_C57BL6NJ_G0033708	Hras	94	33.702
MGP_C57BL6NJ_G0019558	Rab5c	98	40.845	MGP_C57BL6NJ_G0019764	Rab37	95	40.845
MGP_C57BL6NJ_G0019558	Rab5c	89	35.784	MGP_C57BL6NJ_G0020255	Rab15	95	35.784
MGP_C57BL6NJ_G0019558	Rab5c	73	31.875	MGP_C57BL6NJ_G0019159	Rab34	62	31.875
MGP_C57BL6NJ_G0019558	Rab5c	75	48.447	MGP_C57BL6NJ_G0023942	Rab11b	89	49.624