EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0020377 (Gene tree)
Gene ID: -
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 6013 bases
Position: chr12:90897910-90903922
Accession: 1916394
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0035998	RRM_1	PF00076.22	4.1e-14	1	1
MGP_C57BL6NJ_P0035997	RRM_1	PF00076.22	8.9e-14	1	1
MGP_C57BL6NJ_P0035999	RRM_1	PF00076.22	8.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0035997	-	802	-	MGP_C57BL6NJ_P0035997	99 (aa)	-	Q9D8T7
MGP_C57BL6NJ_T0035998	-	385	-	MGP_C57BL6NJ_P0035998	112 (aa)	-	-
MGP_C57BL6NJ_T0035999	-	335	-	MGP_C57BL6NJ_P0035999	102 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0020377's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0020377's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0020377	Slirp	78	33.846	MGP_C57BL6NJ_G0017886	Dazap1	89	33.846
MGP_C57BL6NJ_G0020377	Slirp	70	33.824	MGP_C57BL6NJ_G0019317	Msi2	60	33.824
MGP_C57BL6NJ_G0020377	Slirp	73	33.846	MGP_C57BL6NJ_G0018659	Hnrnpab	51	33.846
MGP_C57BL6NJ_G0020377	Slirp	70	33.333	MGP_C57BL6NJ_G0030211	Hnrnpd	71	33.333