EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0020666 (Gene tree)
Gene ID: -
Gene Symbol: Zkscan4
Alias: AI841875|Gm11272|OTTMUSG00000000421
Full Name: zinc finger with KRAB and SCAN domains 4
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 7609 bases
Position: chr13:19411382-19418990
Accession: 3649412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	1	7
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	2	7
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	3	7
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	4	7
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	5	7
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	6	7
MGP_C57BL6NJ_P0036835	zf-C2H2	PF00096.26	1.8e-41	7	7
MGP_C57BL6NJ_P0036835	zf-met	PF12874.7	6.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0036835	-	2205	-	MGP_C57BL6NJ_P0036835	415 (aa)	-	Q5SZT6

Gene Model

Click here to download MGP_C57BL6NJ_G0020666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0020666's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0020666	Zkscan4	74	48.276	MGP_C57BL6NJ_G0032265	Zfp112	55	48.511
MGP_C57BL6NJ_G0020666	Zkscan4	64	53.714	MGP_C57BL6NJ_G0032267	Zfp111	73	53.714
MGP_C57BL6NJ_G0020666	Zkscan4	77	51.938	MGP_C57BL6NJ_G0032266	Zfp235	73	51.938
MGP_C57BL6NJ_G0020666	Zkscan4	61	35.294	MGP_C57BL6NJ_G0034479	Zfp319	87	35.057
MGP_C57BL6NJ_G0020666	Zkscan4	59	49.583	MGP_C57BL6NJ_G0018644	Zfp454	69	48.305
MGP_C57BL6NJ_G0020666	Zkscan4	67	46.457	MGP_C57BL6NJ_G0021087	Rslcan18	76	45.887
MGP_C57BL6NJ_G0020666	Zkscan4	61	45.575	MGP_C57BL6NJ_G0032591	Zfp715	71	45.575
MGP_C57BL6NJ_G0020666	Zkscan4	59	45.963	MGP_C57BL6NJ_G0029938	Zbtb49	66	48.611
MGP_C57BL6NJ_G0020666	Zkscan4	66	51.695	MGP_C57BL6NJ_G0022420	Zfp251	73	48.927
MGP_C57BL6NJ_G0020666	Zkscan4	58	54.032	MGP_C57BL6NJ_G0031616	Zfp637	73	55.682
MGP_C57BL6NJ_G0020666	Zkscan4	61	53.333	MGP_C57BL6NJ_G0033529	Zfp747	68	53.333
MGP_C57BL6NJ_G0020666	Zkscan4	77	50.000	MGP_C57BL6NJ_G0023637	Zfp51	99	47.234
MGP_C57BL6NJ_G0020666	Zkscan4	63	47.101	MGP_C57BL6NJ_G0031270	Prdm5	74	47.101
MGP_C57BL6NJ_G0020666	Zkscan4	57	48.333	MGP_C57BL6NJ_G0030274	Gfi1	99	48.333
MGP_C57BL6NJ_G0020666	Zkscan4	81	61.290	MGP_C57BL6NJ_G0032439	Zfp420	99	61.290
MGP_C57BL6NJ_G0020666	Zkscan4	72	48.408	MGP_C57BL6NJ_G0023659	Zfp945	90	46.789
MGP_C57BL6NJ_G0020666	Zkscan4	65	47.143	MGP_C57BL6NJ_G0031136	Repin1	95	47.143
MGP_C57BL6NJ_G0020666	Zkscan4	62	43.363	MGP_C57BL6NJ_G0033528	E430018J23Rik	61	41.778
MGP_C57BL6NJ_G0020666	Zkscan4	59	49.057	MGP_C57BL6NJ_G0033526	Zfp768	52	53.289
MGP_C57BL6NJ_G0020666	Zkscan4	67	40.667	MGP_C57BL6NJ_G0023666	Zscan10	89	43.564
MGP_C57BL6NJ_G0020666	Zkscan4	62	40.928	MGP_C57BL6NJ_G0030303	4930522L14Rik	98	41.315
MGP_C57BL6NJ_G0020666	Zkscan4	61	56.667	MGP_C57BL6NJ_G0018653	Zfp354a	69	56.667
MGP_C57BL6NJ_G0020666	Zkscan4	61	49.793	MGP_C57BL6NJ_G0034908	Zfp26	79	49.793
MGP_C57BL6NJ_G0020666	Zkscan4	82	46.829	MGP_C57BL6NJ_G0023635	Zfp677	85	46.829
MGP_C57BL6NJ_G0020666	Zkscan4	59	45.223	MGP_C57BL6NJ_G0032011	Zfp628	63	43.182
MGP_C57BL6NJ_G0020666	Zkscan4	57	53.103	MGP_C57BL6NJ_G0027315	Zfp334	65	53.103
MGP_C57BL6NJ_G0020666	Zkscan4	57	41.964	MGP_C57BL6NJ_G0029473	Zbtb17	56	41.964
MGP_C57BL6NJ_G0020666	Zkscan4	60	46.512	MGP_C57BL6NJ_G0025014	Zfp236	60	46.512
MGP_C57BL6NJ_G0020666	Zkscan4	61	52.381	MGP_C57BL6NJ_G0032301	Zfp574	75	50.000
MGP_C57BL6NJ_G0020666	Zkscan4	73	55.435	MGP_C57BL6NJ_G0026884	Zfp661	76	47.619
MGP_C57BL6NJ_G0020666	Zkscan4	61	47.489	MGP_C57BL6NJ_G0034262	Zfp882	85	47.489
MGP_C57BL6NJ_G0020666	Zkscan4	66	44.574	MGP_C57BL6NJ_G0034261	Zfp709	86	51.020
MGP_C57BL6NJ_G0020666	Zkscan4	61	55.689	MGP_C57BL6NJ_G0034637	Zfp1	67	55.689
MGP_C57BL6NJ_G0020666	Zkscan4	61	45.455	MGP_C57BL6NJ_G0018791	Zfp867	77	46.465
MGP_C57BL6NJ_G0020666	Zkscan4	61	37.073	MGP_C57BL6NJ_G0027353	Zfp64	70	37.073
MGP_C57BL6NJ_G0020666	Zkscan4	63	50.000	MGP_C57BL6NJ_G0032270	Zfp61	58	50.000
MGP_C57BL6NJ_G0020666	Zkscan4	70	47.159	MGP_C57BL6NJ_G0032271	Zfp94	72	47.577
MGP_C57BL6NJ_G0020666	Zkscan4	64	47.273	MGP_C57BL6NJ_G0021088	Zfp759	89	46.083
MGP_C57BL6NJ_G0020666	Zkscan4	60	48.472	MGP_C57BL6NJ_G0021105	Zfp748	93	48.472
MGP_C57BL6NJ_G0020666	Zkscan4	62	45.415	MGP_C57BL6NJ_G0018741	Zfp672	100	41.975
MGP_C57BL6NJ_G0020666	Zkscan4	70	46.809	MGP_C57BL6NJ_G0018977	Bcl6b	51	46.809
MGP_C57BL6NJ_G0020666	Zkscan4	61	45.982	MGP_C57BL6NJ_G0034971	Zfp872	87	49.091
MGP_C57BL6NJ_G0020666	Zkscan4	57	46.296	MGP_C57BL6NJ_G0032019	Zfp865	78	37.220