EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0021730 (Gene tree)
Gene ID: -
Gene Symbol: Pabpn1
Alias: PAB2|Pab2|Pabp2|Pabp3|mPABII|poly(A) binding protein II
Full Name: poly(A) binding protein%2C nuclear 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 8955 bases
Position: chr14:51343687-51352641
Accession: 1859158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0039901	RRM_1	PF00076.22	3.9e-15	1	1
MGP_C57BL6NJ_P0039907	RRM_1	PF00076.22	4.8e-15	1	1
MGP_C57BL6NJ_P0039902	RRM_1	PF00076.22	5.4e-15	1	1
MGP_C57BL6NJ_P0039904	RRM_1	PF00076.22	1.3e-14	1	1
MGP_C57BL6NJ_P0039903	RRM_1	PF00076.22	1.4e-14	1	1
MGP_C57BL6NJ_P0039905	RRM_1	PF00076.22	1.5e-14	1	1
MGP_C57BL6NJ_P0039908	RRM_1	PF00076.22	8.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0039901	-	680	XM_006519272	MGP_C57BL6NJ_P0039901	164 (aa)	XP_006519335	Q8CCS6
MGP_C57BL6NJ_T0039903	-	1027	-	MGP_C57BL6NJ_P0039903	301 (aa)	-	-
MGP_C57BL6NJ_T0039902	-	2238	-	MGP_C57BL6NJ_P0039902	196 (aa)	-	-
MGP_C57BL6NJ_T0039905	-	1772	-	MGP_C57BL6NJ_P0039905	318 (aa)	-	-
MGP_C57BL6NJ_T0039904	-	1758	-	MGP_C57BL6NJ_P0039904	291 (aa)	-	-
MGP_C57BL6NJ_T0039907	-	700	-	MGP_C57BL6NJ_P0039907	178 (aa)	-	-
MGP_C57BL6NJ_T0039906	-	823	-	MGP_C57BL6NJ_P0039906	73 (aa)	-	-
MGP_C57BL6NJ_T0039908	-	938	-	MGP_C57BL6NJ_P0039908	42 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0021730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0021730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0021730	Pabpn1	93	61.538	MGP_C57BL6NJ_G0034728	Pabpn1l	51	54.422
MGP_C57BL6NJ_G0021730	Pabpn1	100	100.000	MGP_C57BL6NJ_G0021729	Gm20521	57	100.000