EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0021799 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 62132 bases
Position: chr14:53352010-53414141
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0040117	RRM_1	PF00076.22	3.5e-32	1	2
MGP_C57BL6NJ_P0040117	RRM_1	PF00076.22	3.5e-32	2	2
MGP_C57BL6NJ_P0040116	RRM_1	PF00076.22	4.9e-32	1	2
MGP_C57BL6NJ_P0040116	RRM_1	PF00076.22	4.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0040118	-	528	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0040119	-	601	-	MGP_C57BL6NJ_P0040119	58 (aa)	-	-
MGP_C57BL6NJ_T0040116	-	2383	-	MGP_C57BL6NJ_P0040116	523 (aa)	-	Q8R326
MGP_C57BL6NJ_T0040117	-	2863	-	MGP_C57BL6NJ_P0040117	466 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0021799's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0021799's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0021799	Pspc1	84	71.429	MGP_C57BL6NJ_G0029214	Sfpq	55	65.891
MGP_C57BL6NJ_G0021799	Pspc1	84	67.347	MGP_C57BL6NJ_G0036458	-	63	58.065
MGP_C57BL6NJ_G0021799	Pspc1	69	41.304	MGP_C57BL6NJ_G0017880	Cirbp	68	34.247
MGP_C57BL6NJ_G0021799	Pspc1	95	35.484	MGP_C57BL6NJ_G0025085	Rbm4b	72	33.036
MGP_C57BL6NJ_G0021799	Pspc1	93	36.066	MGP_C57BL6NJ_G0025086	Rbm4	77	33.036