EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0022203 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 13407 bases
Position: chr15:36327411-36340817
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0041236	PABP	PF00658.18	8.8e-33	1	1
MGP_C57BL6NJ_P0041235	PABP	PF00658.18	7.5e-32	1	1
MGP_C57BL6NJ_P0041235	RRM_5	PF13893.6	2.4e-08	1	2
MGP_C57BL6NJ_P0041235	RRM_5	PF13893.6	2.4e-08	2	2
MGP_C57BL6NJ_P0041235	RRM_1	PF00076.22	1.5e-90	1	4
MGP_C57BL6NJ_P0041235	RRM_1	PF00076.22	1.5e-90	2	4
MGP_C57BL6NJ_P0041235	RRM_1	PF00076.22	1.5e-90	3	4
MGP_C57BL6NJ_P0041235	RRM_1	PF00076.22	1.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0041241	-	2861	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0041235	-	2835	XM_011245339	MGP_C57BL6NJ_P0041235	636 (aa)	XP_011243641	P29341
MGP_C57BL6NJ_T0041236	-	610	-	MGP_C57BL6NJ_P0041236	117 (aa)	-	-
MGP_C57BL6NJ_T0041237	-	725	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0041240	-	747	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0041238	-	632	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0041239	-	866	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0022203's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0022203's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0022203	Pabpc1	98	74.322	MGP_C57BL6NJ_G0028476	-	99	74.322
MGP_C57BL6NJ_G0022203	Pabpc1	85	62.113	MGP_C57BL6NJ_G0027257	Pabpc1l	85	65.805
MGP_C57BL6NJ_G0022203	Pabpc1	100	80.346	MGP_C57BL6NJ_G0024778	Pabpc2	100	80.346
MGP_C57BL6NJ_G0022203	Pabpc1	58	36.145	MGP_C57BL6NJ_G0034964	Elavl3	93	36.145
MGP_C57BL6NJ_G0022203	Pabpc1	57	32.450	MGP_C57BL6NJ_G0033826	Elavl1	95	32.450
MGP_C57BL6NJ_G0022203	Pabpc1	58	34.667	MGP_C57BL6NJ_G0030430	Rbm19	62	34.667
MGP_C57BL6NJ_G0022203	Pabpc1	58	64.607	MGP_C57BL6NJ_G0036541	Pabpc5	95	64.463
MGP_C57BL6NJ_G0022203	Pabpc1	51	34.884	MGP_C57BL6NJ_G0025747	Celf2	57	35.714
MGP_C57BL6NJ_G0022203	Pabpc1	58	36.145	MGP_C57BL6NJ_G0028998	Elavl4	88	36.145
MGP_C57BL6NJ_G0022203	Pabpc1	99	80.186	MGP_C57BL6NJ_G0023550	Pabpc6	99	80.341
MGP_C57BL6NJ_G0022203	Pabpc1	52	39.759	MGP_C57BL6NJ_G0017954	Celf5	71	39.759
MGP_C57BL6NJ_G0022203	Pabpc1	58	37.349	MGP_C57BL6NJ_G0028865	Elavl2	89	37.349
MGP_C57BL6NJ_G0022203	Pabpc1	98	77.342	MGP_C57BL6NJ_G0029162	Pabpc4	98	77.320
MGP_C57BL6NJ_G0022203	Pabpc1	59	67.493	MGP_C57BL6NJ_G0027608	Pabpc4l	97	69.277
MGP_C57BL6NJ_G0022203	Pabpc1	57	38.095	MGP_C57BL6NJ_G0031411	Tia1	87	38.095
MGP_C57BL6NJ_G0022203	Pabpc1	56	34.783	MGP_C57BL6NJ_G0033576	Tial1	94	31.008
MGP_C57BL6NJ_G0022203	Pabpc1	57	39.344	MGP_C57BL6NJ_G0028025	Sf3b4	79	30.876