EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0022830 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp2
Alias: AW412548|Cbp|Hnrnpx|Hnrpx|alphaCP-2
Full Name: poly(rC) binding protein 2
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 38006 bases
Position: chr15:108549102-108587107
Accession: 108202
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0043222	KH_1	PF00013.29	1.6e-49	1	3
MGP_C57BL6NJ_P0043222	KH_1	PF00013.29	1.6e-49	2	3
MGP_C57BL6NJ_P0043222	KH_1	PF00013.29	1.6e-49	3	3
MGP_C57BL6NJ_P0043224	KH_1	PF00013.29	2e-49	1	3
MGP_C57BL6NJ_P0043224	KH_1	PF00013.29	2e-49	2	3
MGP_C57BL6NJ_P0043224	KH_1	PF00013.29	2e-49	3	3
MGP_C57BL6NJ_P0043223	KH_1	PF00013.29	2.4e-49	1	3
MGP_C57BL6NJ_P0043223	KH_1	PF00013.29	2.4e-49	2	3
MGP_C57BL6NJ_P0043223	KH_1	PF00013.29	2.4e-49	3	3
MGP_C57BL6NJ_P0043222	KH_2	PF07650.17	2e-14	1	1
MGP_C57BL6NJ_P0043224	KH_2	PF07650.17	2.5e-14	1	1
MGP_C57BL6NJ_P0043223	KH_2	PF07650.17	3.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0043224	-	2768	-	MGP_C57BL6NJ_P0043224	349 (aa)	-	-
MGP_C57BL6NJ_T0043223	-	2807	-	MGP_C57BL6NJ_P0043223	362 (aa)	-	-
MGP_C57BL6NJ_T0043222	-	2714	XM_006520582	MGP_C57BL6NJ_P0043222	331 (aa)	XP_006520645	Q61990

Gene Model

Click here to download MGP_C57BL6NJ_G0022830's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0022830's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0022830	Pcbp2	68	33.333	MGP_C57BL6NJ_G0024354	Khsrp	51	33.333
MGP_C57BL6NJ_G0022830	Pcbp2	100	81.744	MGP_C57BL6NJ_G0031414	Pcbp1	100	81.744
MGP_C57BL6NJ_G0022830	Pcbp2	69	39.726	MGP_C57BL6NJ_G0020103	Nova1	53	39.726
MGP_C57BL6NJ_G0022830	Pcbp2	84	43.434	MGP_C57BL6NJ_G0032933	-	61	43.434
MGP_C57BL6NJ_G0022830	Pcbp2	95	35.556	MGP_C57BL6NJ_G0023083	Igf2bp2	62	35.556
MGP_C57BL6NJ_G0022830	Pcbp2	84	44.444	MGP_C57BL6NJ_G0021017	Hnrnpk	78	31.724
MGP_C57BL6NJ_G0022830	Pcbp2	97	59.877	MGP_C57BL6NJ_G0035725	-	98	66.321
MGP_C57BL6NJ_G0022830	Pcbp2	99	78.338	MGP_C57BL6NJ_G0017785	Pcbp3	99	82.143
MGP_C57BL6NJ_G0022830	Pcbp2	68	41.096	MGP_C57BL6NJ_G0032196	Nova2	50	41.096