EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0045949	PABP	PF00658.18	1.4e-26	1	1
MGP_C57BL6NJ_P0045949	RRM_5	PF13893.6	4.3e-07	1	1
MGP_C57BL6NJ_P0045949	RRM_1	PF00076.22	1.9e-89	1	4
MGP_C57BL6NJ_P0045949	RRM_1	PF00076.22	1.9e-89	2	4
MGP_C57BL6NJ_P0045949	RRM_1	PF00076.22	1.9e-89	3	4
MGP_C57BL6NJ_P0045949	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0045949	-	3208	-	MGP_C57BL6NJ_P0045949	643 (aa)	-	Q9D4E6

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0023550	Pabpc6	60	37.349	MGP_C57BL6NJ_G0028865	Elavl2	90	37.349
MGP_C57BL6NJ_G0023550	Pabpc6	64	39.062	MGP_C57BL6NJ_G0035394	Celf6	77	39.062
MGP_C57BL6NJ_G0023550	Pabpc6	72	36.585	MGP_C57BL6NJ_G0027972	Celf3	80	37.500
MGP_C57BL6NJ_G0023550	Pabpc6	99	70.186	MGP_C57BL6NJ_G0024778	Pabpc2	99	69.876
MGP_C57BL6NJ_G0023550	Pabpc6	58	38.798	MGP_C57BL6NJ_G0028025	Sf3b4	50	38.798
MGP_C57BL6NJ_G0023550	Pabpc6	51	34.211	MGP_C57BL6NJ_G0025747	Celf2	57	34.211
MGP_C57BL6NJ_G0023550	Pabpc6	99	67.340	MGP_C57BL6NJ_G0029162	Pabpc4	99	67.000
MGP_C57BL6NJ_G0023550	Pabpc6	53	35.526	MGP_C57BL6NJ_G0026558	Celf1	52	35.526
MGP_C57BL6NJ_G0023550	Pabpc6	59	34.091	MGP_C57BL6NJ_G0035900	Rbms3	77	33.708
MGP_C57BL6NJ_G0023550	Pabpc6	57	34.667	MGP_C57BL6NJ_G0030430	Rbm19	70	34.667
MGP_C57BL6NJ_G0023550	Pabpc6	61	36.145	MGP_C57BL6NJ_G0034964	Elavl3	93	36.145
MGP_C57BL6NJ_G0023550	Pabpc6	60	32.468	MGP_C57BL6NJ_G0028998	Elavl4	88	32.468
MGP_C57BL6NJ_G0023550	Pabpc6	62	36.842	MGP_C57BL6NJ_G0024616	Celf4	62	36.842
MGP_C57BL6NJ_G0023550	Pabpc6	56	34.014	MGP_C57BL6NJ_G0033576	Tial1	94	31.783
MGP_C57BL6NJ_G0023550	Pabpc6	99	80.341	MGP_C57BL6NJ_G0022203	Pabpc1	99	80.186
MGP_C57BL6NJ_G0023550	Pabpc6	99	64.844	MGP_C57BL6NJ_G0028476	-	99	64.587
MGP_C57BL6NJ_G0023550	Pabpc6	78	58.349	MGP_C57BL6NJ_G0027257	Pabpc1l	83	60.279
MGP_C57BL6NJ_G0023550	Pabpc6	58	36.905	MGP_C57BL6NJ_G0031411	Tia1	96	36.905
MGP_C57BL6NJ_G0023550	Pabpc6	59	58.470	MGP_C57BL6NJ_G0036541	Pabpc5	95	58.445
MGP_C57BL6NJ_G0023550	Pabpc6	58	64.497	MGP_C57BL6NJ_G0027608	Pabpc4l	98	64.497