EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0023998 (Gene tree)
Gene ID: -
Gene Symbol: Skiv2l
Alias: 4930534J06Rik|AW214248|Ddx13|SKI|Ski2w
Full Name: superkiller viralicidic activity 2-like (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 10983 bases
Position: chr17:36288355-36299337
Accession: 1099835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0047628	rRNA_proc-arch	PF13234.6	1.3e-41	1	1
MGP_C57BL6NJ_P0047632	rRNA_proc-arch	PF13234.6	1e-17	1	2
MGP_C57BL6NJ_P0047632	rRNA_proc-arch	PF13234.6	1e-17	2	2
MGP_C57BL6NJ_P0047628	DEAD	PF00270.29	1.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0047634	-	927	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047629	-	3995	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047628	-	3951	-	MGP_C57BL6NJ_P0047628	1244 (aa)	-	-
MGP_C57BL6NJ_T0047636	-	458	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047637	-	881	-	MGP_C57BL6NJ_P0047637	92 (aa)	-	-
MGP_C57BL6NJ_T0047627	-	4119	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047635	-	832	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047632	-	727	-	MGP_C57BL6NJ_P0047632	242 (aa)	-	-
MGP_C57BL6NJ_T0047633	-	817	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047630	-	4520	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047631	-	462	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0023998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0023998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0023998	Skiv2l	76	37.279	MGP_C57BL6NJ_G0021327	Skiv2l2	88	37.279