EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0024038 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 13740 bases
Position: chr17:36748614-36762353
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0047821	ResIII	PF04851.15	9.1e-08	1	1
MGP_C57BL6NJ_P0047820	ResIII	PF04851.15	2.3e-07	1	1
MGP_C57BL6NJ_P0047823	ResIII	PF04851.15	2.3e-07	1	1
MGP_C57BL6NJ_P0047825	ResIII	PF04851.15	2.3e-07	1	1
MGP_C57BL6NJ_P0047820	DEAD	PF00270.29	1.2e-38	1	1
MGP_C57BL6NJ_P0047823	DEAD	PF00270.29	1.2e-38	1	1
MGP_C57BL6NJ_P0047825	DEAD	PF00270.29	1.2e-38	1	1
MGP_C57BL6NJ_P0047821	DEAD	PF00270.29	4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0047823	-	2848	-	MGP_C57BL6NJ_P0047823	428 (aa)	-	-
MGP_C57BL6NJ_T0047822	-	1711	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0047821	-	759	-	MGP_C57BL6NJ_P0047821	148 (aa)	-	-
MGP_C57BL6NJ_T0047820	-	1739	-	MGP_C57BL6NJ_P0047820	428 (aa)	-	Q9Z1N5
MGP_C57BL6NJ_T0047825	-	1770	-	MGP_C57BL6NJ_P0047825	428 (aa)	-	-
MGP_C57BL6NJ_T0047824	-	740	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0024038	Ddx39b	99	37.415	MGP_C57BL6NJ_G0019870	Eif4a3	88	38.356
MGP_C57BL6NJ_G0024038	Ddx39b	99	36.667	MGP_C57BL6NJ_G0034195	Ddx49	78	32.891
MGP_C57BL6NJ_G0024038	Ddx39b	99	36.424	MGP_C57BL6NJ_G0027329	Ddx27	54	31.655
MGP_C57BL6NJ_G0024038	Ddx39b	99	31.792	MGP_C57BL6NJ_G0036071	Ddx3x	56	30.105
MGP_C57BL6NJ_G0024038	Ddx39b	100	90.888	MGP_C57BL6NJ_G0034335	Ddx39	100	90.888
MGP_C57BL6NJ_G0024038	Ddx39b	99	37.838	MGP_C57BL6NJ_G0031331	Gm8994	83	36.032
MGP_C57BL6NJ_G0024038	Ddx39b	99	37.838	MGP_C57BL6NJ_G0031330	Gm5580	81	37.695
MGP_C57BL6NJ_G0024038	Ddx39b	99	31.792	MGP_C57BL6NJ_G0017321	D1Pas1	57	30.105
MGP_C57BL6NJ_G0024038	Ddx39b	99	36.486	MGP_C57BL6NJ_G0031854	Ddx47	90	31.926
MGP_C57BL6NJ_G0024038	Ddx39b	77	30.029	MGP_C57BL6NJ_G0019705	Ddx5	55	30.029
MGP_C57BL6NJ_G0024038	Ddx39b	99	37.162	MGP_C57BL6NJ_G0034625	Ddx19a	82	33.083
MGP_C57BL6NJ_G0024038	Ddx39b	99	36.424	MGP_C57BL6NJ_G0034626	Ddx19b	82	32.836
MGP_C57BL6NJ_G0024038	Ddx39b	99	35.135	MGP_C57BL6NJ_G0035026	Ddx25	82	32.020
MGP_C57BL6NJ_G0024038	Ddx39b	99	40.816	MGP_C57BL6NJ_G0023094	Eif4a2	88	35.501
MGP_C57BL6NJ_G0024038	Ddx39b	99	38.776	MGP_C57BL6NJ_G0018937	Eif4a1	84	37.166