EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0024778 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:39637176-39639761
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0049983	PABP	PF00658.18	1.8e-21	1	1
MGP_C57BL6NJ_P0049983	RRM_5	PF13893.6	8.5e-10	1	2
MGP_C57BL6NJ_P0049983	RRM_5	PF13893.6	8.5e-10	2	2
MGP_C57BL6NJ_P0049983	RRM_1	PF00076.22	2.1e-86	1	4
MGP_C57BL6NJ_P0049983	RRM_1	PF00076.22	2.1e-86	2	4
MGP_C57BL6NJ_P0049983	RRM_1	PF00076.22	2.1e-86	3	4
MGP_C57BL6NJ_P0049983	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0049983	-	2586	-	MGP_C57BL6NJ_P0049983	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_C57BL6NJ_G0024778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0024778's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0024778	Pabpc2	98	66.610	MGP_C57BL6NJ_G0029162	Pabpc4	99	66.724
MGP_C57BL6NJ_G0024778	Pabpc2	59	36.145	MGP_C57BL6NJ_G0028865	Elavl2	89	36.145
MGP_C57BL6NJ_G0024778	Pabpc2	59	34.940	MGP_C57BL6NJ_G0028998	Elavl4	88	34.940
MGP_C57BL6NJ_G0024778	Pabpc2	61	34.940	MGP_C57BL6NJ_G0034964	Elavl3	91	34.940
MGP_C57BL6NJ_G0024778	Pabpc2	62	60.955	MGP_C57BL6NJ_G0036541	Pabpc5	96	61.111
MGP_C57BL6NJ_G0024778	Pabpc2	61	64.167	MGP_C57BL6NJ_G0027608	Pabpc4l	95	68.098
MGP_C57BL6NJ_G0024778	Pabpc2	78	61.492	MGP_C57BL6NJ_G0027257	Pabpc1l	84	61.492
MGP_C57BL6NJ_G0024778	Pabpc2	59	34.667	MGP_C57BL6NJ_G0030430	Rbm19	70	34.667
MGP_C57BL6NJ_G0024778	Pabpc2	57	35.443	MGP_C57BL6NJ_G0031411	Tia1	95	33.835
MGP_C57BL6NJ_G0024778	Pabpc2	98	65.865	MGP_C57BL6NJ_G0028476	-	99	65.865
MGP_C57BL6NJ_G0024778	Pabpc2	100	80.346	MGP_C57BL6NJ_G0022203	Pabpc1	100	80.346
MGP_C57BL6NJ_G0024778	Pabpc2	58	38.068	MGP_C57BL6NJ_G0028025	Sf3b4	75	31.250
MGP_C57BL6NJ_G0024778	Pabpc2	63	38.554	MGP_C57BL6NJ_G0017954	Celf5	98	38.554
MGP_C57BL6NJ_G0024778	Pabpc2	99	69.876	MGP_C57BL6NJ_G0023550	Pabpc6	99	70.186
MGP_C57BL6NJ_G0024778	Pabpc2	50	35.036	MGP_C57BL6NJ_G0033576	Tial1	92	32.500