EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0024813 (Gene tree)
Gene ID: -
Gene Symbol: Ythdc2
Alias: 3010002F02Rik|BC037178
Full Name: YTH domain containing 2
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 73244 bases
Position: chr18:45086257-45159500
Accession: 2448561
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0050044	R3H	PF01424.22	1.5e-10	1	1
MGP_C57BL6NJ_P0050044	DEAD	PF00270.29	2.6e-09	1	1
MGP_C57BL6NJ_P0050044	YTH	PF04146.15	1.3e-42	1	1
MGP_C57BL6NJ_P0050044	HA2	PF04408.23	6.8e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0050045	-	1327	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0050044	-	7215	-	MGP_C57BL6NJ_P0050044	1445 (aa)	-	B2RR83
MGP_C57BL6NJ_T0050047	-	416	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0050046	-	4290	-	MGP_C57BL6NJ_P0050046	585 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0024813's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0024813's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0024813	Ythdc2	90	35.912	MGP_C57BL6NJ_G0017000	Dhx9	56	47.685
MGP_C57BL6NJ_G0024813	Ythdc2	72	36.504	MGP_C57BL6NJ_G0024463	Dhx57	55	50.800
MGP_C57BL6NJ_G0024813	Ythdc2	89	32.714	MGP_C57BL6NJ_G0021328	Dhx29	55	46.491
MGP_C57BL6NJ_G0024813	Ythdc2	70	35.392	MGP_C57BL6NJ_G0035839	Dhx30	56	47.236
MGP_C57BL6NJ_G0024813	Ythdc2	69	31.785	MGP_C57BL6NJ_G0029974	Dhx15	80	41.262
MGP_C57BL6NJ_G0024813	Ythdc2	88	36.015	MGP_C57BL6NJ_G0027678	Dhx36	80	41.667