EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0050920	zf-CCHC	PF00098.23	1.6e-07	1	1
MGP_C57BL6NJ_P0050914	zf-CCHC	PF00098.23	3.1e-07	1	1
MGP_C57BL6NJ_P0050921	zf-CCHC	PF00098.23	0.00076	1	1
MGP_C57BL6NJ_P0050921	RRM_5	PF13893.6	4.1e-09	1	2
MGP_C57BL6NJ_P0050921	RRM_5	PF13893.6	4.1e-09	2	2
MGP_C57BL6NJ_P0050920	RRM_5	PF13893.6	1.1e-08	1	2
MGP_C57BL6NJ_P0050920	RRM_5	PF13893.6	1.1e-08	2	2
MGP_C57BL6NJ_P0050914	RRM_5	PF13893.6	4.4e-08	1	2
MGP_C57BL6NJ_P0050914	RRM_5	PF13893.6	4.4e-08	2	2
MGP_C57BL6NJ_P0050917	RRM_5	PF13893.6	2e-06	1	1
MGP_C57BL6NJ_P0050918	RRM_5	PF13893.6	2e-06	1	1
MGP_C57BL6NJ_P0050921	RRM_1	PF00076.22	1.4e-35	1	2
MGP_C57BL6NJ_P0050921	RRM_1	PF00076.22	1.4e-35	2	2
MGP_C57BL6NJ_P0050920	RRM_1	PF00076.22	3.5e-35	1	2
MGP_C57BL6NJ_P0050920	RRM_1	PF00076.22	3.5e-35	2	2
MGP_C57BL6NJ_P0050917	RRM_1	PF00076.22	9.9e-35	1	2
MGP_C57BL6NJ_P0050917	RRM_1	PF00076.22	9.9e-35	2	2
MGP_C57BL6NJ_P0050918	RRM_1	PF00076.22	9.9e-35	1	2
MGP_C57BL6NJ_P0050918	RRM_1	PF00076.22	9.9e-35	2	2
MGP_C57BL6NJ_P0050914	RRM_1	PF00076.22	1.3e-34	1	2
MGP_C57BL6NJ_P0050914	RRM_1	PF00076.22	1.3e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0050917	-	1018	-	MGP_C57BL6NJ_P0050917	143 (aa)	-	-
MGP_C57BL6NJ_T0050914	-	2610	-	MGP_C57BL6NJ_P0050914	361 (aa)	-	Q8C7Q4
MGP_C57BL6NJ_T0050918	-	801	-	MGP_C57BL6NJ_P0050918	143 (aa)	-	-
MGP_C57BL6NJ_T0050922	-	2965	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0050920	-	738	-	MGP_C57BL6NJ_P0050920	227 (aa)	-	-
MGP_C57BL6NJ_T0050921	-	583	-	MGP_C57BL6NJ_P0050921	172 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0025086	Rbm4	77	33.036	MGP_C57BL6NJ_G0021799	Pspc1	93	36.066
MGP_C57BL6NJ_G0025086	Rbm4	52	30.120	MGP_C57BL6NJ_G0028998	Elavl4	61	30.120
MGP_C57BL6NJ_G0025086	Rbm4	98	30.000	MGP_C57BL6NJ_G0031411	Tia1	85	30.000
MGP_C57BL6NJ_G0025086	Rbm4	54	31.765	MGP_C57BL6NJ_G0036247	Rbmx	83	31.765
MGP_C57BL6NJ_G0025086	Rbm4	94	30.345	MGP_C57BL6NJ_G0033576	Tial1	84	30.088
MGP_C57BL6NJ_G0025086	Rbm4	100	100.000	MGP_C57BL6NJ_G0025085	Rbm4b	94	97.203
MGP_C57BL6NJ_G0025086	Rbm4	52	34.667	MGP_C57BL6NJ_G0027236	Srsf6	56	34.667
MGP_C57BL6NJ_G0025086	Rbm4	97	44.604	MGP_C57BL6NJ_G0025087	Rbm14	94	41.964
MGP_C57BL6NJ_G0025086	Rbm4	100	100.000	MGP_C57BL6NJ_G0025084	Gm21992	100	100.000