EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0025454 (Gene tree)
Gene ID: -
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|ACF64|ACF65|ASP|Acf|Asp|MCM|MerCreMer|Tg(Myh6-cre/Esr1)1Jmk|Tg(Myh6-cre/Esr1*)1Jmk|alpha-MHC-MerCreMer|alphaMHC-Cre-Mer-Cre|apobec-1 complementation factor|mer
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 91841 bases
Position: chr19:31306992-31398832
Accession: 1917115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0051975	DND1_DSRM	PF14709.7	1.9e-25	1	1
MGP_C57BL6NJ_P0051975	RRM_1	PF00076.22	2.3e-39	1	3
MGP_C57BL6NJ_P0051975	RRM_1	PF00076.22	2.3e-39	2	3
MGP_C57BL6NJ_P0051975	RRM_1	PF00076.22	2.3e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0051975	-	3828	XM_006527331	MGP_C57BL6NJ_P0051975	595 (aa)	XP_006527394	Q5YD48

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0025454	A1cf	96	70.064	MGP_C57BL6NJ_G0027748	Rbm46	88	70.064
MGP_C57BL6NJ_G0025454	A1cf	51	53.398	MGP_C57BL6NJ_G0035602	Syncrip	58	52.308
MGP_C57BL6NJ_G0025454	A1cf	51	53.896	MGP_C57BL6NJ_G0029389	-	59	52.997
MGP_C57BL6NJ_G0025454	A1cf	76	56.632	MGP_C57BL6NJ_G0030018	Rbm47	89	67.376