EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0026182 (Gene tree)
Gene ID: -
Gene Symbol: Rbms1
Alias: 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|Mssp|Mssp1|YC1
Full Name: RNA binding motif%2C single stranded interacting protein 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 224545 bases
Position: chr2:62136625-62361169
Accession: 1861774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0055381	RRM_1	PF00076.22	1.4e-32	1	2
MGP_C57BL6NJ_P0055381	RRM_1	PF00076.22	1.4e-32	2	2
MGP_C57BL6NJ_P0055379	RRM_1	PF00076.22	1.7e-32	1	2
MGP_C57BL6NJ_P0055379	RRM_1	PF00076.22	1.7e-32	2	2
MGP_C57BL6NJ_P0055380	RRM_1	PF00076.22	1.8e-32	1	2
MGP_C57BL6NJ_P0055380	RRM_1	PF00076.22	1.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0055384	-	224	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0055385	-	217	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0055379	-	4429	XM_006499940	MGP_C57BL6NJ_P0055379	403 (aa)	XP_006500003	Q91W59
MGP_C57BL6NJ_T0055387	-	123	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0055386	-	202	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0055381	-	1806	-	MGP_C57BL6NJ_P0055381	386 (aa)	-	-
MGP_C57BL6NJ_T0055380	-	2543	-	MGP_C57BL6NJ_P0055380	417 (aa)	-	-
MGP_C57BL6NJ_T0055383	-	757	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0055382	-	644	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0026182's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0026182's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0026182	Rbms1	99	66.753	MGP_C57BL6NJ_G0018243	Rbms2	86	71.758
MGP_C57BL6NJ_G0026182	Rbms1	53	32.773	MGP_C57BL6NJ_G0028998	Elavl4	70	36.458
MGP_C57BL6NJ_G0026182	Rbms1	51	33.645	MGP_C57BL6NJ_G0034964	Elavl3	65	36.207
MGP_C57BL6NJ_G0026182	Rbms1	51	37.209	MGP_C57BL6NJ_G0028865	Elavl2	60	41.558
MGP_C57BL6NJ_G0026182	Rbms1	96	71.538	MGP_C57BL6NJ_G0035900	Rbms3	99	80.841