EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0026226 (Gene tree)
Gene ID: -
Gene Symbol: Ssb
Alias: La protein|SS-B|Ss-b|autoantigen La
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 10289 bases
Position: chr2:71973096-71983384
Accession: 98423
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0055610	RRM_1	PF00076.22	4.1e-12	1	1
MGP_C57BL6NJ_P0055611	RRM_1	PF00076.22	4.1e-12	1	1
MGP_C57BL6NJ_P0055613	RRM_1	PF00076.22	7.1e-10	1	1
MGP_C57BL6NJ_P0055615	RRM_3	PF08777.11	2.8e-28	1	1
MGP_C57BL6NJ_P0055610	RRM_3	PF08777.11	7.3e-28	1	1
MGP_C57BL6NJ_P0055611	RRM_3	PF08777.11	7.3e-28	1	1
MGP_C57BL6NJ_P0055613	La	PF05383.17	2.7e-22	1	1
MGP_C57BL6NJ_P0055610	La	PF05383.17	7.7e-22	1	1
MGP_C57BL6NJ_P0055611	La	PF05383.17	7.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0055615	-	991	-	MGP_C57BL6NJ_P0055615	229 (aa)	-	-
MGP_C57BL6NJ_T0055614	-	666	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0055613	-	634	-	MGP_C57BL6NJ_P0055613	184 (aa)	-	-
MGP_C57BL6NJ_T0055612	-	1563	-	MGP_C57BL6NJ_P0055612	159 (aa)	-	-
MGP_C57BL6NJ_T0055611	-	2088	-	MGP_C57BL6NJ_P0055611	415 (aa)	-	-
MGP_C57BL6NJ_T0055610	-	2001	XM_006499069	MGP_C57BL6NJ_P0055610	415 (aa)	XP_006499132	P32067

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0026226's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0026226	Ssb	69	38.182	MGP_C57BL6NJ_G0028276	Larp7	64	47.059