EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0026558 (Gene tree)
Gene ID: -
Gene Symbol: Celf1
Alias: 1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp|Cugbp1|D2Wsu101e|HNAB50|NAB50
Full Name: CUGBP%2C Elav-like family member 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 82305 bases
Position: chr2:95491006-95573310
Accession: 1342295
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0056466	RRM_1	PF00076.22	4.1e-52	1	3
MGP_C57BL6NJ_P0056466	RRM_1	PF00076.22	4.1e-52	2	3
MGP_C57BL6NJ_P0056466	RRM_1	PF00076.22	4.1e-52	3	3
MGP_C57BL6NJ_P0056460	RRM_1	PF00076.22	4.2e-52	1	3
MGP_C57BL6NJ_P0056460	RRM_1	PF00076.22	4.2e-52	2	3
MGP_C57BL6NJ_P0056460	RRM_1	PF00076.22	4.2e-52	3	3
MGP_C57BL6NJ_P0056465	RRM_1	PF00076.22	5.2e-52	1	3
MGP_C57BL6NJ_P0056465	RRM_1	PF00076.22	5.2e-52	2	3
MGP_C57BL6NJ_P0056465	RRM_1	PF00076.22	5.2e-52	3	3
MGP_C57BL6NJ_P0056463	RRM_1	PF00076.22	6.7e-52	1	3
MGP_C57BL6NJ_P0056463	RRM_1	PF00076.22	6.7e-52	2	3
MGP_C57BL6NJ_P0056463	RRM_1	PF00076.22	6.7e-52	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0056465	-	5758	-	MGP_C57BL6NJ_P0056465	513 (aa)	-	-
MGP_C57BL6NJ_T0056464	-	271	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0056467	-	489	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0056466	-	4432	-	MGP_C57BL6NJ_P0056466	483 (aa)	-	-
MGP_C57BL6NJ_T0056461	-	426	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0056460	-	7851	-	MGP_C57BL6NJ_P0056460	487 (aa)	-	-
MGP_C57BL6NJ_T0056463	-	5851	-	MGP_C57BL6NJ_P0056463	543 (aa)	-	-
MGP_C57BL6NJ_T0056462	-	478	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0056459	-	350	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0026558	Celf1	98	44.650	MGP_C57BL6NJ_G0017954	Celf5	93	56.322
MGP_C57BL6NJ_G0026558	Celf1	70	38.636	MGP_C57BL6NJ_G0029162	Pabpc4	53	38.636
MGP_C57BL6NJ_G0026558	Celf1	100	45.200	MGP_C57BL6NJ_G0024616	Celf4	100	42.430
MGP_C57BL6NJ_G0026558	Celf1	69	41.975	MGP_C57BL6NJ_G0028865	Elavl2	85	41.975
MGP_C57BL6NJ_G0026558	Celf1	98	45.135	MGP_C57BL6NJ_G0035394	Celf6	91	45.549
MGP_C57BL6NJ_G0026558	Celf1	97	43.522	MGP_C57BL6NJ_G0027972	Celf3	99	43.830
MGP_C57BL6NJ_G0026558	Celf1	62	40.741	MGP_C57BL6NJ_G0028998	Elavl4	78	40.741
MGP_C57BL6NJ_G0026558	Celf1	61	45.679	MGP_C57BL6NJ_G0033826	Elavl1	83	45.679
MGP_C57BL6NJ_G0026558	Celf1	57	37.879	MGP_C57BL6NJ_G0027608	Pabpc4l	65	34.211
MGP_C57BL6NJ_G0026558	Celf1	52	35.526	MGP_C57BL6NJ_G0023550	Pabpc6	53	35.526
MGP_C57BL6NJ_G0026558	Celf1	100	80.082	MGP_C57BL6NJ_G0025747	Celf2	100	88.060
MGP_C57BL6NJ_G0026558	Celf1	57	43.590	MGP_C57BL6NJ_G0034964	Elavl3	74	42.391
MGP_C57BL6NJ_G0026558	Celf1	53	43.421	MGP_C57BL6NJ_G0035900	Rbms3	68	43.421