EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0027184 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 38460 bases
Position: chr2:165739364-165777823
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0059157	RRM_1	PF00076.22	1.3e-41	1	2
MGP_C57BL6NJ_P0059157	RRM_1	PF00076.22	1.3e-41	2	2
MGP_C57BL6NJ_P0059158	RRM_1	PF00076.22	1.7e-41	1	2
MGP_C57BL6NJ_P0059158	RRM_1	PF00076.22	1.7e-41	2	2
MGP_C57BL6NJ_P0059160	RRM_1	PF00076.22	1.7e-41	1	2
MGP_C57BL6NJ_P0059160	RRM_1	PF00076.22	1.7e-41	2	2
MGP_C57BL6NJ_P0059163	RRM_1	PF00076.22	2.2e-22	1	1
MGP_C57BL6NJ_P0059164	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0059181	-	715	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059180	-	1008	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059158	-	2580	-	MGP_C57BL6NJ_P0059158	524 (aa)	-	-
MGP_C57BL6NJ_T0059159	-	2744	-	MGP_C57BL6NJ_P0059159	415 (aa)	-	-
MGP_C57BL6NJ_T0059172	-	707	-	MGP_C57BL6NJ_P0059172	40 (aa)	-	-
MGP_C57BL6NJ_T0059173	-	593	-	MGP_C57BL6NJ_P0059173	39 (aa)	-	-
MGP_C57BL6NJ_T0059170	-	711	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059171	-	685	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059176	-	743	-	MGP_C57BL6NJ_P0059176	40 (aa)	-	-
MGP_C57BL6NJ_T0059177	-	667	-	MGP_C57BL6NJ_P0059177	38 (aa)	-	-
MGP_C57BL6NJ_T0059174	-	707	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059175	-	585	-	MGP_C57BL6NJ_P0059175	62 (aa)	-	-
MGP_C57BL6NJ_T0059178	-	672	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059179	-	699	-	MGP_C57BL6NJ_P0059179	40 (aa)	-	-
MGP_C57BL6NJ_T0059157	-	2810	XM_006498832	MGP_C57BL6NJ_P0059157	530 (aa)	XP_006498895	Q8VH51
MGP_C57BL6NJ_T0059161	-	2127	-	MGP_C57BL6NJ_P0059161	47 (aa)	-	-
MGP_C57BL6NJ_T0059160	-	2711	-	MGP_C57BL6NJ_P0059160	524 (aa)	-	-
MGP_C57BL6NJ_T0059163	-	931	-	MGP_C57BL6NJ_P0059163	310 (aa)	-	-
MGP_C57BL6NJ_T0059162	-	2120	-	MGP_C57BL6NJ_P0059162	40 (aa)	-	-
MGP_C57BL6NJ_T0059165	-	695	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059164	-	1090	-	MGP_C57BL6NJ_P0059164	273 (aa)	-	-
MGP_C57BL6NJ_T0059167	-	1456	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059166	-	546	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059169	-	497	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059168	-	754	-	MGP_C57BL6NJ_P0059168	156 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027184	Rbm39	52	34.483	MGP_C57BL6NJ_G0017886	Dazap1	94	34.483
MGP_C57BL6NJ_G0027184	Rbm39	68	30.978	MGP_C57BL6NJ_G0028025	Sf3b4	58	30.978