EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0027234 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik|CHD-6|Kiaa1335
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 170789 bases
Position: chr2:171063023-171233811
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0059436	ResIII	PF04851.15	4.2e-08	1	1
MGP_C57BL6NJ_P0059432	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0059441	-	675	-	MGP_C57BL6NJ_P0059441	217 (aa)	-	-
MGP_C57BL6NJ_T0059433	-	735	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059432	-	10515	XM_006500181	MGP_C57BL6NJ_P0059432	2711 (aa)	XP_011238078	A3KFM7
MGP_C57BL6NJ_T0059437	-	601	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059436	-	3608	-	MGP_C57BL6NJ_P0059436	1183 (aa)	-	-
MGP_C57BL6NJ_T0059435	-	3970	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059434	-	764	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059442	-	5051	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059439	-	616	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059438	-	3092	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059440	-	646	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0027234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0027234's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027234	Chd6	66	36.621	MGP_C57BL6NJ_G0029611	Chd5	51	34.657
MGP_C57BL6NJ_G0027234	Chd6	84	72.837	MGP_C57BL6NJ_G0028453	Chd7	72	64.905
MGP_C57BL6NJ_G0027234	Chd6	61	37.625	MGP_C57BL6NJ_G0032852	Chd2	63	32.583
MGP_C57BL6NJ_G0027234	Chd6	88	69.158	MGP_C57BL6NJ_G0021693	Chd8	66	63.353
MGP_C57BL6NJ_G0027234	Chd6	84	71.227	MGP_C57BL6NJ_G0034423	Chd9	74	61.717