EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0027257 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 39142 bases
Position: chr2:174332996-174372137
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0059525	RRM_5	PF13893.6	2.6e-17	1	3
MGP_C57BL6NJ_P0059525	RRM_5	PF13893.6	2.6e-17	2	3
MGP_C57BL6NJ_P0059525	RRM_5	PF13893.6	2.6e-17	3	3
MGP_C57BL6NJ_P0059525	RRM_1	PF00076.22	2.7e-90	1	4
MGP_C57BL6NJ_P0059525	RRM_1	PF00076.22	2.7e-90	2	4
MGP_C57BL6NJ_P0059525	RRM_1	PF00076.22	2.7e-90	3	4
MGP_C57BL6NJ_P0059525	RRM_1	PF00076.22	2.7e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0059528	-	328	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059525	-	2260	XM_006499825	MGP_C57BL6NJ_P0059525	575 (aa)	XP_006499888	A2A5N3
MGP_C57BL6NJ_T0059527	-	438	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059526	-	617	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0027257's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0027257's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027257	Pabpc1l	66	57.778	MGP_C57BL6NJ_G0027608	Pabpc4l	95	60.736
MGP_C57BL6NJ_G0027257	Pabpc1l	60	34.118	MGP_C57BL6NJ_G0027972	Celf3	67	32.857
MGP_C57BL6NJ_G0027257	Pabpc1l	63	38.095	MGP_C57BL6NJ_G0031411	Tia1	87	38.095
MGP_C57BL6NJ_G0027257	Pabpc1l	56	39.759	MGP_C57BL6NJ_G0017880	Cirbp	94	39.759
MGP_C57BL6NJ_G0027257	Pabpc1l	63	35.870	MGP_C57BL6NJ_G0017954	Celf5	70	32.812
MGP_C57BL6NJ_G0027257	Pabpc1l	84	61.492	MGP_C57BL6NJ_G0024778	Pabpc2	78	61.492
MGP_C57BL6NJ_G0027257	Pabpc1l	64	34.921	MGP_C57BL6NJ_G0030430	Rbm19	74	34.921
MGP_C57BL6NJ_G0027257	Pabpc1l	74	70.000	MGP_C57BL6NJ_G0029162	Pabpc4	81	61.216
MGP_C57BL6NJ_G0027257	Pabpc1l	85	65.805	MGP_C57BL6NJ_G0022203	Pabpc1	85	62.113
MGP_C57BL6NJ_G0027257	Pabpc1l	59	30.864	MGP_C57BL6NJ_G0021011	Hnrnpa0	50	31.613
MGP_C57BL6NJ_G0027257	Pabpc1l	67	33.735	MGP_C57BL6NJ_G0028998	Elavl4	89	33.735
MGP_C57BL6NJ_G0027257	Pabpc1l	67	34.940	MGP_C57BL6NJ_G0028865	Elavl2	92	34.940
MGP_C57BL6NJ_G0027257	Pabpc1l	52	43.038	MGP_C57BL6NJ_G0036039	Rbm3	72	43.038
MGP_C57BL6NJ_G0027257	Pabpc1l	67	57.022	MGP_C57BL6NJ_G0036541	Pabpc5	96	56.944
MGP_C57BL6NJ_G0027257	Pabpc1l	62	30.818	MGP_C57BL6NJ_G0035900	Rbms3	77	30.818
MGP_C57BL6NJ_G0027257	Pabpc1l	83	60.279	MGP_C57BL6NJ_G0023550	Pabpc6	78	58.349
MGP_C57BL6NJ_G0027257	Pabpc1l	75	67.277	MGP_C57BL6NJ_G0028476	-	71	67.277
MGP_C57BL6NJ_G0027257	Pabpc1l	51	35.616	MGP_C57BL6NJ_G0035394	Celf6	66	35.616