EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0027329 (Gene tree)
Gene ID: -
Gene Symbol: Ddx27
Alias: C86129
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 19457 bases
Position: chr2:177733958-177753414
Accession: 2385884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0059811	ResIII	PF04851.15	1.6e-06	1	1
MGP_C57BL6NJ_P0059811	DEAD	PF00270.29	7.2e-45	1	1
MGP_C57BL6NJ_P0059812	DEAD	PF00270.29	2.4e-18	1	1
MGP_C57BL6NJ_P0059813	DEAD	PF00270.29	6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0059811	-	2714	XM_006499422	MGP_C57BL6NJ_P0059811	760 (aa)	XP_006499485	Q921N6
MGP_C57BL6NJ_T0059813	-	955	-	MGP_C57BL6NJ_P0059813	310 (aa)	-	-
MGP_C57BL6NJ_T0059812	-	2151	-	MGP_C57BL6NJ_P0059812	292 (aa)	-	-
MGP_C57BL6NJ_T0059815	-	649	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059814	-	264	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059816	-	708	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0027329's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0027329's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027329	Ddx27	53	34.615	MGP_C57BL6NJ_G0016816	Ddx18	61	34.856
MGP_C57BL6NJ_G0027329	Ddx27	54	31.655	MGP_C57BL6NJ_G0024038	Ddx39b	99	36.424
MGP_C57BL6NJ_G0027329	Ddx27	53	31.019	MGP_C57BL6NJ_G0018411	Ddx56	98	33.065
MGP_C57BL6NJ_G0027329	Ddx27	52	34.129	MGP_C57BL6NJ_G0017699	Ddx50	61	34.272
MGP_C57BL6NJ_G0027329	Ddx27	59	33.696	MGP_C57BL6NJ_G0034195	Ddx49	94	33.623
MGP_C57BL6NJ_G0027329	Ddx27	51	35.938	MGP_C57BL6NJ_G0020440	Ddx24	56	35.938
MGP_C57BL6NJ_G0027329	Ddx27	56	32.558	MGP_C57BL6NJ_G0022487	Ddx17	56	33.880