EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0027352 (Gene tree)
Gene ID: -
Gene Symbol: Sall4
Alias: 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20
Full Name: sal-like 4 (Drosophila)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 21631 bases
Position: chr2:179716858-179738488
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0059918	zf-C2H2	PF00096.26	1.4e-29	1	6
MGP_C57BL6NJ_P0059918	zf-C2H2	PF00096.26	1.4e-29	2	6
MGP_C57BL6NJ_P0059918	zf-C2H2	PF00096.26	1.4e-29	3	6
MGP_C57BL6NJ_P0059918	zf-C2H2	PF00096.26	1.4e-29	4	6
MGP_C57BL6NJ_P0059918	zf-C2H2	PF00096.26	1.4e-29	5	6
MGP_C57BL6NJ_P0059918	zf-C2H2	PF00096.26	1.4e-29	6	6
MGP_C57BL6NJ_P0059920	zf-C2H2	PF00096.26	2e-13	1	2
MGP_C57BL6NJ_P0059920	zf-C2H2	PF00096.26	2e-13	2	2
MGP_C57BL6NJ_P0059919	zf-C2H2	PF00096.26	3.2e-11	1	2
MGP_C57BL6NJ_P0059919	zf-C2H2	PF00096.26	3.2e-11	2	2
MGP_C57BL6NJ_P0059917	zf-C2H2	PF00096.26	3.3e-08	1	2
MGP_C57BL6NJ_P0059917	zf-C2H2	PF00096.26	3.3e-08	2	2
MGP_C57BL6NJ_P0059918	zf-met	PF12874.7	2.3e-11	1	1
MGP_C57BL6NJ_P0059920	zf-met	PF12874.7	1.4e-09	1	2
MGP_C57BL6NJ_P0059920	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0059921	-	773	-	MGP_C57BL6NJ_P0059921	215 (aa)	-	-
MGP_C57BL6NJ_T0059919	-	2534	-	MGP_C57BL6NJ_P0059919	278 (aa)	-	-
MGP_C57BL6NJ_T0059923	-	328	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059922	-	423	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0059917	-	3741	XM_006500486	MGP_C57BL6NJ_P0059917	623 (aa)	XP_006500549	Q8BX22
MGP_C57BL6NJ_T0059918	-	5073	-	MGP_C57BL6NJ_P0059918	1067 (aa)	-	-
MGP_C57BL6NJ_T0059920	-	393	-	MGP_C57BL6NJ_P0059920	131 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0027352's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0027352's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027352	Sall4	100	64.706	MGP_C57BL6NJ_G0034420	Sall1	95	64.706
MGP_C57BL6NJ_G0027352	Sall4	73	53.333	MGP_C57BL6NJ_G0025014	Zfp236	81	53.333
MGP_C57BL6NJ_G0027352	Sall4	98	84.507	MGP_C57BL6NJ_G0025011	Sall3	66	65.385