EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0027608 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 6022 bases
Position: chr3:46507702-46513723
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0061138	RRM_5	PF13893.6	1.6e-13	1	3
MGP_C57BL6NJ_P0061138	RRM_5	PF13893.6	1.6e-13	2	3
MGP_C57BL6NJ_P0061138	RRM_5	PF13893.6	1.6e-13	3	3
MGP_C57BL6NJ_P0061139	RRM_5	PF13893.6	1.6e-13	1	3
MGP_C57BL6NJ_P0061139	RRM_5	PF13893.6	1.6e-13	2	3
MGP_C57BL6NJ_P0061139	RRM_5	PF13893.6	1.6e-13	3	3
MGP_C57BL6NJ_P0061138	RRM_1	PF00076.22	4.7e-83	1	4
MGP_C57BL6NJ_P0061138	RRM_1	PF00076.22	4.7e-83	2	4
MGP_C57BL6NJ_P0061138	RRM_1	PF00076.22	4.7e-83	3	4
MGP_C57BL6NJ_P0061138	RRM_1	PF00076.22	4.7e-83	4	4
MGP_C57BL6NJ_P0061139	RRM_1	PF00076.22	4.7e-83	1	4
MGP_C57BL6NJ_P0061139	RRM_1	PF00076.22	4.7e-83	2	4
MGP_C57BL6NJ_P0061139	RRM_1	PF00076.22	4.7e-83	3	4
MGP_C57BL6NJ_P0061139	RRM_1	PF00076.22	4.7e-83	4	4
MGP_C57BL6NJ_P0061140	RRM_1	PF00076.22	1.8e-40	1	2
MGP_C57BL6NJ_P0061140	RRM_1	PF00076.22	1.8e-40	2	2
MGP_C57BL6NJ_P0061141	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0061139	-	5217	-	MGP_C57BL6NJ_P0061139	370 (aa)	-	-
MGP_C57BL6NJ_T0061138	-	5251	XM_006500774	MGP_C57BL6NJ_P0061138	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_C57BL6NJ_T0061140	-	723	-	MGP_C57BL6NJ_P0061140	172 (aa)	-	-
MGP_C57BL6NJ_T0061141	-	467	-	MGP_C57BL6NJ_P0061141	50 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0027608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0027608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027608	Pabpc4l	95	60.736	MGP_C57BL6NJ_G0027257	Pabpc1l	66	57.778
MGP_C57BL6NJ_G0027608	Pabpc4l	65	34.211	MGP_C57BL6NJ_G0026558	Celf1	57	37.879
MGP_C57BL6NJ_G0027608	Pabpc4l	64	36.842	MGP_C57BL6NJ_G0036039	Rbm3	67	33.333
MGP_C57BL6NJ_G0027608	Pabpc4l	96	36.145	MGP_C57BL6NJ_G0034964	Elavl3	91	36.145
MGP_C57BL6NJ_G0027608	Pabpc4l	94	30.464	MGP_C57BL6NJ_G0033826	Elavl1	91	30.464
MGP_C57BL6NJ_G0027608	Pabpc4l	97	57.865	MGP_C57BL6NJ_G0036541	Pabpc5	96	57.967
MGP_C57BL6NJ_G0027608	Pabpc4l	97	69.277	MGP_C57BL6NJ_G0022203	Pabpc1	59	67.493
MGP_C57BL6NJ_G0027608	Pabpc4l	98	64.497	MGP_C57BL6NJ_G0023550	Pabpc6	58	64.497
MGP_C57BL6NJ_G0027608	Pabpc4l	89	31.875	MGP_C57BL6NJ_G0029292	Trnau1ap	88	34.211
MGP_C57BL6NJ_G0027608	Pabpc4l	98	67.969	MGP_C57BL6NJ_G0029162	Pabpc4	63	67.969
MGP_C57BL6NJ_G0027608	Pabpc4l	95	30.539	MGP_C57BL6NJ_G0031411	Tia1	95	30.000
MGP_C57BL6NJ_G0027608	Pabpc4l	94	33.333	MGP_C57BL6NJ_G0033576	Tial1	99	31.618
MGP_C57BL6NJ_G0027608	Pabpc4l	95	68.098	MGP_C57BL6NJ_G0024778	Pabpc2	61	64.167
MGP_C57BL6NJ_G0027608	Pabpc4l	96	38.636	MGP_C57BL6NJ_G0028025	Sf3b4	67	34.699
MGP_C57BL6NJ_G0027608	Pabpc4l	96	30.065	MGP_C57BL6NJ_G0028998	Elavl4	70	35.484
MGP_C57BL6NJ_G0027608	Pabpc4l	96	34.940	MGP_C57BL6NJ_G0028865	Elavl2	89	34.940
MGP_C57BL6NJ_G0027608	Pabpc4l	99	67.397	MGP_C57BL6NJ_G0028476	-	64	67.262