EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0027972 (Gene tree)
Gene ID: -
Gene Symbol: Celf3
Alias: 4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4
Full Name: CUGBP%2C Elav-like family member 3
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 15161 bases
Position: chr3:98642057-98657217
Accession: 1926034
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0062671	RRM_1	PF00076.22	9.3e-54	1	3
MGP_C57BL6NJ_P0062671	RRM_1	PF00076.22	9.3e-54	2	3
MGP_C57BL6NJ_P0062671	RRM_1	PF00076.22	9.3e-54	3	3
MGP_C57BL6NJ_P0062670	RRM_1	PF00076.22	1.5e-53	1	3
MGP_C57BL6NJ_P0062670	RRM_1	PF00076.22	1.5e-53	2	3
MGP_C57BL6NJ_P0062670	RRM_1	PF00076.22	1.5e-53	3	3
MGP_C57BL6NJ_P0062672	RRM_1	PF00076.22	1.5e-53	1	3
MGP_C57BL6NJ_P0062672	RRM_1	PF00076.22	1.5e-53	2	3
MGP_C57BL6NJ_P0062672	RRM_1	PF00076.22	1.5e-53	3	3
MGP_C57BL6NJ_P0062669	RRM_1	PF00076.22	2e-53	1	3
MGP_C57BL6NJ_P0062669	RRM_1	PF00076.22	2e-53	2	3
MGP_C57BL6NJ_P0062669	RRM_1	PF00076.22	2e-53	3	3
MGP_C57BL6NJ_P0062668	RRM_1	PF00076.22	5.4e-38	1	2
MGP_C57BL6NJ_P0062668	RRM_1	PF00076.22	5.4e-38	2	2
MGP_C57BL6NJ_P0062677	RRM_1	PF00076.22	6.9e-16	1	1
MGP_C57BL6NJ_P0062678	RRM_1	PF00076.22	1.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0062674	-	669	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062680	-	889	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062681	-	855	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062668	-	2416	-	MGP_C57BL6NJ_P0062668	370 (aa)	-	-
MGP_C57BL6NJ_T0062669	-	3175	-	MGP_C57BL6NJ_P0062669	494 (aa)	-	-
MGP_C57BL6NJ_T0062679	-	3365	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062678	-	726	-	MGP_C57BL6NJ_P0062678	231 (aa)	-	-
MGP_C57BL6NJ_T0062677	-	779	-	MGP_C57BL6NJ_P0062677	182 (aa)	-	-
MGP_C57BL6NJ_T0062676	-	2934	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062675	-	2443	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062667	-	360	XM_006502323	MGP_C57BL6NJ_P0062667	31 (aa)	XP_006502386	Q8CIN6
MGP_C57BL6NJ_T0062673	-	1193	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0062672	-	2477	-	MGP_C57BL6NJ_P0062672	466 (aa)	-	-
MGP_C57BL6NJ_T0062671	-	2353	-	MGP_C57BL6NJ_P0062671	416 (aa)	-	-
MGP_C57BL6NJ_T0062670	-	2746	-	MGP_C57BL6NJ_P0062670	465 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0027972's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0027972's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0027972	Celf3	98	35.632	MGP_C57BL6NJ_G0034964	Elavl3	96	34.234
MGP_C57BL6NJ_G0027972	Celf3	98	35.632	MGP_C57BL6NJ_G0033826	Elavl1	95	44.444
MGP_C57BL6NJ_G0027972	Celf3	100	46.402	MGP_C57BL6NJ_G0025747	Celf2	94	83.333
MGP_C57BL6NJ_G0027972	Celf3	100	66.848	MGP_C57BL6NJ_G0017954	Celf5	93	76.744
MGP_C57BL6NJ_G0027972	Celf3	99	43.830	MGP_C57BL6NJ_G0026558	Celf1	97	43.522
MGP_C57BL6NJ_G0027972	Celf3	97	35.632	MGP_C57BL6NJ_G0028865	Elavl2	91	35.632
MGP_C57BL6NJ_G0027972	Celf3	81	87.368	MGP_C57BL6NJ_G0035394	Celf6	75	85.526
MGP_C57BL6NJ_G0027972	Celf3	69	32.877	MGP_C57BL6NJ_G0028476	-	59	35.632
MGP_C57BL6NJ_G0027972	Celf3	77	37.805	MGP_C57BL6NJ_G0031411	Tia1	93	38.667
MGP_C57BL6NJ_G0027972	Celf3	100	69.072	MGP_C57BL6NJ_G0024616	Celf4	97	65.971
MGP_C57BL6NJ_G0027972	Celf3	67	32.857	MGP_C57BL6NJ_G0027257	Pabpc1l	60	34.118
MGP_C57BL6NJ_G0027972	Celf3	80	37.500	MGP_C57BL6NJ_G0023550	Pabpc6	72	36.585
MGP_C57BL6NJ_G0027972	Celf3	61	40.741	MGP_C57BL6NJ_G0028998	Elavl4	85	40.741
MGP_C57BL6NJ_G0027972	Celf3	70	34.091	MGP_C57BL6NJ_G0033576	Tial1	81	37.333
MGP_C57BL6NJ_G0027972	Celf3	91	39.474	MGP_C57BL6NJ_G0035900	Rbms3	76	39.474