EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0028025 (Gene tree)
Gene ID: -
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|SF3b50|Sap49
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 9992 bases
Position: chr3:100530804-100540795
Accession: 109580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0062996	RRM_1	PF00076.22	5.5e-39	1	2
MGP_C57BL6NJ_P0062996	RRM_1	PF00076.22	5.5e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0062998	-	2021	-	MGP_C57BL6NJ_P0062998	596 (aa)	-	-
MGP_C57BL6NJ_T0062996	-	1914	-	MGP_C57BL6NJ_P0062996	424 (aa)	-	Q8QZY9
MGP_C57BL6NJ_T0062997	-	437	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0028025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0028025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028025	Sf3b4	58	30.978	MGP_C57BL6NJ_G0027184	Rbm39	68	30.978
MGP_C57BL6NJ_G0028025	Sf3b4	58	34.409	MGP_C57BL6NJ_G0028476	-	59	40.437
MGP_C57BL6NJ_G0028025	Sf3b4	54	40.741	MGP_C57BL6NJ_G0036247	Rbmx	90	40.476
MGP_C57BL6NJ_G0028025	Sf3b4	57	37.059	MGP_C57BL6NJ_G0031411	Tia1	99	41.558
MGP_C57BL6NJ_G0028025	Sf3b4	75	31.250	MGP_C57BL6NJ_G0024778	Pabpc2	58	38.068
MGP_C57BL6NJ_G0028025	Sf3b4	59	36.986	MGP_C57BL6NJ_G0028998	Elavl4	92	36.667
MGP_C57BL6NJ_G0028025	Sf3b4	50	38.798	MGP_C57BL6NJ_G0023550	Pabpc6	58	38.798
MGP_C57BL6NJ_G0028025	Sf3b4	79	30.876	MGP_C57BL6NJ_G0022203	Pabpc1	57	39.344
MGP_C57BL6NJ_G0028025	Sf3b4	59	35.616	MGP_C57BL6NJ_G0034964	Elavl3	97	32.447
MGP_C57BL6NJ_G0028025	Sf3b4	79	30.625	MGP_C57BL6NJ_G0017954	Celf5	88	34.524
MGP_C57BL6NJ_G0028025	Sf3b4	67	34.699	MGP_C57BL6NJ_G0027608	Pabpc4l	96	38.636
MGP_C57BL6NJ_G0028025	Sf3b4	53	31.250	MGP_C57BL6NJ_G0030213	Hnrnpdl	66	31.034
MGP_C57BL6NJ_G0028025	Sf3b4	53	30.714	MGP_C57BL6NJ_G0030211	Hnrnpd	100	32.432
MGP_C57BL6NJ_G0028025	Sf3b4	50	32.877	MGP_C57BL6NJ_G0028042	Rbm8a	52	32.877
MGP_C57BL6NJ_G0028025	Sf3b4	59	33.140	MGP_C57BL6NJ_G0028865	Elavl2	93	30.939
MGP_C57BL6NJ_G0028025	Sf3b4	59	31.818	MGP_C57BL6NJ_G0033826	Elavl1	96	31.792
MGP_C57BL6NJ_G0028025	Sf3b4	57	33.929	MGP_C57BL6NJ_G0029162	Pabpc4	58	40.816
MGP_C57BL6NJ_G0028025	Sf3b4	57	36.719	MGP_C57BL6NJ_G0033576	Tial1	91	33.594
MGP_C57BL6NJ_G0028025	Sf3b4	61	31.507	MGP_C57BL6NJ_G0036541	Pabpc5	98	40.828
MGP_C57BL6NJ_G0028025	Sf3b4	59	34.783	MGP_C57BL6NJ_G0017880	Cirbp	92	34.737
MGP_C57BL6NJ_G0028025	Sf3b4	53	38.462	MGP_C57BL6NJ_G0036039	Rbm3	70	38.462