EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0028242 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp2
Alias: Brptb|Nptb|Ptb2|brPTB|nPTB
Full Name: polypyrimidine tract binding protein 2
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 65643 bases
Position: chr3:126270839-126336481
Accession: 1860489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0063893	RRM_5	PF13893.6	3.4e-53	1	3
MGP_C57BL6NJ_P0063893	RRM_5	PF13893.6	3.4e-53	2	3
MGP_C57BL6NJ_P0063893	RRM_5	PF13893.6	3.4e-53	3	3
MGP_C57BL6NJ_P0063892	RRM_5	PF13893.6	4e-52	1	2
MGP_C57BL6NJ_P0063892	RRM_5	PF13893.6	4e-52	2	2
MGP_C57BL6NJ_P0063898	RRM_5	PF13893.6	3.4e-20	1	1
MGP_C57BL6NJ_P0063892	RRM_1	PF00076.22	5.9e-33	1	3
MGP_C57BL6NJ_P0063892	RRM_1	PF00076.22	5.9e-33	2	3
MGP_C57BL6NJ_P0063892	RRM_1	PF00076.22	5.9e-33	3	3
MGP_C57BL6NJ_P0063893	RRM_1	PF00076.22	2e-32	1	3
MGP_C57BL6NJ_P0063893	RRM_1	PF00076.22	2e-32	2	3
MGP_C57BL6NJ_P0063893	RRM_1	PF00076.22	2e-32	3	3
MGP_C57BL6NJ_P0063900	RRM_1	PF00076.22	2.5e-10	1	1
MGP_C57BL6NJ_P0063898	RRM_1	PF00076.22	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0063902	-	478	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0063900	-	1742	-	MGP_C57BL6NJ_P0063900	241 (aa)	-	-
MGP_C57BL6NJ_T0063901	-	654	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0063904	-	389	-	MGP_C57BL6NJ_P0063904	49 (aa)	-	-
MGP_C57BL6NJ_T0063892	-	3777	XM_006501731	MGP_C57BL6NJ_P0063892	531 (aa)	XP_006501794	Q91Z31
MGP_C57BL6NJ_T0063893	-	3364	-	MGP_C57BL6NJ_P0063893	532 (aa)	-	-
MGP_C57BL6NJ_T0063894	-	1598	-	MGP_C57BL6NJ_P0063894	356 (aa)	-	-
MGP_C57BL6NJ_T0063895	-	576	-	MGP_C57BL6NJ_P0063895	33 (aa)	-	-
MGP_C57BL6NJ_T0063896	-	937	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0063897	-	491	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0063898	-	465	-	MGP_C57BL6NJ_P0063898	155 (aa)	-	-
MGP_C57BL6NJ_T0063899	-	4047	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0063903	-	454	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0028242's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0028242's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028242	Ptbp2	100	72.903	MGP_C57BL6NJ_G0017857	Ptbp1	100	73.048
MGP_C57BL6NJ_G0028242	Ptbp2	99	30.357	MGP_C57BL6NJ_G0024458	Hnrnpll	57	30.000
MGP_C57BL6NJ_G0028242	Ptbp2	99	69.835	MGP_C57BL6NJ_G0028757	Ptbp3	91	78.195
MGP_C57BL6NJ_G0028242	Ptbp2	77	30.645	MGP_C57BL6NJ_G0032411	Hnrnpl	77	30.645