EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0028402 (Gene tree)
Gene ID: -
Gene Symbol: Fubp1
Alias: 9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4
Full Name: far upstream element (FUSE) binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 27470 bases
Position: chr3:161208450-161235919
Accession: 1196294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0064765	KH_1	PF00013.29	7.2e-70	1	4
MGP_C57BL6NJ_P0064765	KH_1	PF00013.29	7.2e-70	2	4
MGP_C57BL6NJ_P0064765	KH_1	PF00013.29	7.2e-70	3	4
MGP_C57BL6NJ_P0064765	KH_1	PF00013.29	7.2e-70	4	4
MGP_C57BL6NJ_P0064762	KH_1	PF00013.29	2.2e-69	1	4
MGP_C57BL6NJ_P0064762	KH_1	PF00013.29	2.2e-69	2	4
MGP_C57BL6NJ_P0064762	KH_1	PF00013.29	2.2e-69	3	4
MGP_C57BL6NJ_P0064762	KH_1	PF00013.29	2.2e-69	4	4
MGP_C57BL6NJ_P0064768	KH_1	PF00013.29	2.2e-69	1	4
MGP_C57BL6NJ_P0064768	KH_1	PF00013.29	2.2e-69	2	4
MGP_C57BL6NJ_P0064768	KH_1	PF00013.29	2.2e-69	3	4
MGP_C57BL6NJ_P0064768	KH_1	PF00013.29	2.2e-69	4	4
MGP_C57BL6NJ_P0064766	KH_1	PF00013.29	2.4e-69	1	4
MGP_C57BL6NJ_P0064766	KH_1	PF00013.29	2.4e-69	2	4
MGP_C57BL6NJ_P0064766	KH_1	PF00013.29	2.4e-69	3	4
MGP_C57BL6NJ_P0064766	KH_1	PF00013.29	2.4e-69	4	4
MGP_C57BL6NJ_P0064764	KH_1	PF00013.29	2.4e-69	1	4
MGP_C57BL6NJ_P0064764	KH_1	PF00013.29	2.4e-69	2	4
MGP_C57BL6NJ_P0064764	KH_1	PF00013.29	2.4e-69	3	4
MGP_C57BL6NJ_P0064764	KH_1	PF00013.29	2.4e-69	4	4
MGP_C57BL6NJ_P0064763	KH_1	PF00013.29	7.6e-38	1	2
MGP_C57BL6NJ_P0064763	KH_1	PF00013.29	7.6e-38	2	2
MGP_C57BL6NJ_P0064772	KH_1	PF00013.29	1.1e-16	1	1
MGP_C57BL6NJ_P0064765	KH_2	PF07650.17	1.3e-22	1	2
MGP_C57BL6NJ_P0064765	KH_2	PF07650.17	1.3e-22	2	2
MGP_C57BL6NJ_P0064768	KH_2	PF07650.17	3.4e-22	1	2
MGP_C57BL6NJ_P0064768	KH_2	PF07650.17	3.4e-22	2	2
MGP_C57BL6NJ_P0064766	KH_2	PF07650.17	3.6e-22	1	2
MGP_C57BL6NJ_P0064766	KH_2	PF07650.17	3.6e-22	2	2
MGP_C57BL6NJ_P0064764	KH_2	PF07650.17	3.7e-22	1	2
MGP_C57BL6NJ_P0064764	KH_2	PF07650.17	3.7e-22	2	2
MGP_C57BL6NJ_P0064762	KH_2	PF07650.17	3.7e-22	1	2
MGP_C57BL6NJ_P0064762	KH_2	PF07650.17	3.7e-22	2	2
MGP_C57BL6NJ_P0064763	KH_2	PF07650.17	3.8e-10	1	1
MGP_C57BL6NJ_P0064772	KH_2	PF07650.17	5.3e-06	1	1
MGP_C57BL6NJ_P0064776	DUF1897	PF09005.10	1.7e-12	1	2
MGP_C57BL6NJ_P0064776	DUF1897	PF09005.10	1.7e-12	2	2
MGP_C57BL6NJ_P0064774	DUF1897	PF09005.10	2.1e-12	1	2
MGP_C57BL6NJ_P0064774	DUF1897	PF09005.10	2.1e-12	2	2
MGP_C57BL6NJ_P0064762	DUF1897	PF09005.10	2.4e-11	1	2
MGP_C57BL6NJ_P0064762	DUF1897	PF09005.10	2.4e-11	2	2
MGP_C57BL6NJ_P0064768	DUF1897	PF09005.10	2.5e-11	1	2
MGP_C57BL6NJ_P0064768	DUF1897	PF09005.10	2.5e-11	2	2
MGP_C57BL6NJ_P0064766	DUF1897	PF09005.10	2.6e-11	1	2
MGP_C57BL6NJ_P0064766	DUF1897	PF09005.10	2.6e-11	2	2
MGP_C57BL6NJ_P0064764	DUF1897	PF09005.10	2.6e-11	1	2
MGP_C57BL6NJ_P0064764	DUF1897	PF09005.10	2.6e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0064774	-	796	-	MGP_C57BL6NJ_P0064774	141 (aa)	-	-
MGP_C57BL6NJ_T0064775	-	800	-	MGP_C57BL6NJ_P0064775	173 (aa)	-	-
MGP_C57BL6NJ_T0064776	-	809	-	MGP_C57BL6NJ_P0064776	156 (aa)	-	-
MGP_C57BL6NJ_T0064777	-	5099	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0064770	-	4525	-	MGP_C57BL6NJ_P0064770	642 (aa)	-	-
MGP_C57BL6NJ_T0064771	-	432	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0064772	-	585	-	MGP_C57BL6NJ_P0064772	149 (aa)	-	-
MGP_C57BL6NJ_T0064773	-	512	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0064780	-	665	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0064778	-	424	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0064779	-	4006	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0064769	-	4846	-	MGP_C57BL6NJ_P0064769	700 (aa)	-	-
MGP_C57BL6NJ_T0064768	-	2374	-	MGP_C57BL6NJ_P0064768	643 (aa)	-	-
MGP_C57BL6NJ_T0064763	-	1040	-	MGP_C57BL6NJ_P0064763	306 (aa)	-	-
MGP_C57BL6NJ_T0064762	-	6523	XM_006501660	MGP_C57BL6NJ_P0064762	642 (aa)	XP_006501723	Q91WJ8
MGP_C57BL6NJ_T0064767	-	2096	-	MGP_C57BL6NJ_P0064767	69 (aa)	-	-
MGP_C57BL6NJ_T0064766	-	2526	-	MGP_C57BL6NJ_P0064766	651 (aa)	-	-
MGP_C57BL6NJ_T0064765	-	3163	-	MGP_C57BL6NJ_P0064765	523 (aa)	-	-
MGP_C57BL6NJ_T0064764	-	2552	-	MGP_C57BL6NJ_P0064764	654 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0028402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0028402's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028402	Fubp1	50	36.364	MGP_C57BL6NJ_G0020103	Nova1	57	36.364
MGP_C57BL6NJ_G0028402	Fubp1	53	35.211	MGP_C57BL6NJ_G0021017	Hnrnpk	57	34.615
MGP_C57BL6NJ_G0028402	Fubp1	61	36.765	MGP_C57BL6NJ_G0032196	Nova2	54	36.765
MGP_C57BL6NJ_G0028402	Fubp1	96	64.410	MGP_C57BL6NJ_G0024354	Khsrp	70	67.654
MGP_C57BL6NJ_G0028402	Fubp1	72	33.019	MGP_C57BL6NJ_G0017785	Pcbp3	66	31.250
MGP_C57BL6NJ_G0028402	Fubp1	72	34.524	MGP_C57BL6NJ_G0035725	-	76	33.684
MGP_C57BL6NJ_G0028402	Fubp1	94	59.208	MGP_C57BL6NJ_G0026005	Fubp3	96	64.324