EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0028453 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 184790 bases
Position: chr4:5572377-5757166
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0065077	ResIII	PF04851.15	4.5e-06	1	1
MGP_C57BL6NJ_P0065078	ResIII	PF04851.15	4.5e-06	1	1
MGP_C57BL6NJ_P0065077	BRK	PF07533.16	4.8e-37	1	2
MGP_C57BL6NJ_P0065077	BRK	PF07533.16	4.8e-37	2	2
MGP_C57BL6NJ_P0065078	BRK	PF07533.16	4.8e-37	1	2
MGP_C57BL6NJ_P0065078	BRK	PF07533.16	4.8e-37	2	2
MGP_C57BL6NJ_P0065080	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0065075	-	4953	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065076	-	2381	-	MGP_C57BL6NJ_P0065076	631 (aa)	-	-
MGP_C57BL6NJ_T0065077	-	9444	-	MGP_C57BL6NJ_P0065077	2986 (aa)	-	-
MGP_C57BL6NJ_T0065078	-	10187	-	MGP_C57BL6NJ_P0065078	2986 (aa)	-	-
MGP_C57BL6NJ_T0065079	-	458	-	MGP_C57BL6NJ_P0065079	19 (aa)	-	-
MGP_C57BL6NJ_T0065081	-	8958	-	MGP_C57BL6NJ_P0065081	2985 (aa)	-	-
MGP_C57BL6NJ_T0065080	-	3462	-	MGP_C57BL6NJ_P0065080	941 (aa)	-	-
MGP_C57BL6NJ_T0065082	-	741	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028453	Chd7	94	54.400	MGP_C57BL6NJ_G0034423	Chd9	83	69.649
MGP_C57BL6NJ_G0028453	Chd7	58	69.626	MGP_C57BL6NJ_G0021693	Chd8	79	65.125
MGP_C57BL6NJ_G0028453	Chd7	72	64.905	MGP_C57BL6NJ_G0027234	Chd6	84	72.837