EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0028476 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 7566 bases
Position: chr4:9242390-9249955
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0065194	PABP	PF00658.18	4.2e-28	1	1
MGP_C57BL6NJ_P0065194	RRM_5	PF13893.6	8.7e-07	1	1
MGP_C57BL6NJ_P0065194	RRM_1	PF00076.22	7e-90	1	4
MGP_C57BL6NJ_P0065194	RRM_1	PF00076.22	7e-90	2	4
MGP_C57BL6NJ_P0065194	RRM_1	PF00076.22	7e-90	3	4
MGP_C57BL6NJ_P0065194	RRM_1	PF00076.22	7e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0065194	-	1910	-	MGP_C57BL6NJ_P0065194	619 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0028476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0028476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028476	-	61	31.677	MGP_C57BL6NJ_G0028998	Elavl4	90	31.677
MGP_C57BL6NJ_G0028476	-	58	30.114	MGP_C57BL6NJ_G0033576	Tial1	94	31.579
MGP_C57BL6NJ_G0028476	-	60	30.719	MGP_C57BL6NJ_G0034964	Elavl3	93	33.735
MGP_C57BL6NJ_G0028476	-	99	65.865	MGP_C57BL6NJ_G0024778	Pabpc2	98	65.865
MGP_C57BL6NJ_G0028476	-	61	36.364	MGP_C57BL6NJ_G0024616	Celf4	61	32.110
MGP_C57BL6NJ_G0028476	-	71	67.277	MGP_C57BL6NJ_G0027257	Pabpc1l	75	67.277
MGP_C57BL6NJ_G0028476	-	59	40.437	MGP_C57BL6NJ_G0028025	Sf3b4	58	34.409
MGP_C57BL6NJ_G0028476	-	60	32.680	MGP_C57BL6NJ_G0028865	Elavl2	89	32.680
MGP_C57BL6NJ_G0028476	-	58	34.524	MGP_C57BL6NJ_G0031411	Tia1	95	33.333
MGP_C57BL6NJ_G0028476	-	59	33.553	MGP_C57BL6NJ_G0033826	Elavl1	95	33.553
MGP_C57BL6NJ_G0028476	-	64	67.262	MGP_C57BL6NJ_G0027608	Pabpc4l	99	67.397
MGP_C57BL6NJ_G0028476	-	59	36.364	MGP_C57BL6NJ_G0025747	Celf2	60	36.364
MGP_C57BL6NJ_G0028476	-	99	64.587	MGP_C57BL6NJ_G0023550	Pabpc6	99	64.844
MGP_C57BL6NJ_G0028476	-	99	74.322	MGP_C57BL6NJ_G0022203	Pabpc1	98	74.322
MGP_C57BL6NJ_G0028476	-	59	35.632	MGP_C57BL6NJ_G0027972	Celf3	69	32.877
MGP_C57BL6NJ_G0028476	-	62	64.045	MGP_C57BL6NJ_G0036541	Pabpc5	95	63.912
MGP_C57BL6NJ_G0028476	-	99	93.554	MGP_C57BL6NJ_G0029162	Pabpc4	100	93.554
MGP_C57BL6NJ_G0028476	-	61	36.082	MGP_C57BL6NJ_G0035394	Celf6	62	36.082