EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0028552 (Gene tree)
Gene ID: -
Gene Symbol: Ddx58
Alias: 6430573D20Rik|C330021E21|RIG-I|RLR-1
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 40601 bases
Position: chr4:39493978-39534578
Accession: 2442858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0065490	ResIII	PF04851.15	3.3e-17	1	1
MGP_C57BL6NJ_P0065488	ResIII	PF04851.15	5.5e-17	1	1
MGP_C57BL6NJ_P0065488	RIG-I_C-RD	PF11648.8	4.9e-35	1	1
MGP_C57BL6NJ_P0065490	DEAD	PF00270.29	1.3e-16	1	1
MGP_C57BL6NJ_P0065488	DEAD	PF00270.29	2.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0065489	-	756	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065488	-	3874	-	MGP_C57BL6NJ_P0065488	926 (aa)	-	-
MGP_C57BL6NJ_T0065492	-	1250	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065493	-	541	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065490	-	2127	-	MGP_C57BL6NJ_P0065490	707 (aa)	-	-
MGP_C57BL6NJ_T0065491	-	1641	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065487	-	3533	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065486	-	386	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0065494	-	1607	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0028552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028552	Ddx58	72	35.010	MGP_C57BL6NJ_G0019555	Dhx58	97	32.468
MGP_C57BL6NJ_G0028552	Ddx58	98	30.691	MGP_C57BL6NJ_G0026190	Ifih1	97	30.691