EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0028998 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 156639 bases
Position: chr4:114988631-115145269
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0067404	RRM_5	PF13893.6	2.9e-13	1	2
MGP_C57BL6NJ_P0067404	RRM_5	PF13893.6	2.9e-13	2	2
MGP_C57BL6NJ_P0067399	RRM_5	PF13893.6	3.1e-13	1	2
MGP_C57BL6NJ_P0067399	RRM_5	PF13893.6	3.1e-13	2	2
MGP_C57BL6NJ_P0067400	RRM_5	PF13893.6	3.2e-13	1	2
MGP_C57BL6NJ_P0067400	RRM_5	PF13893.6	3.2e-13	2	2
MGP_C57BL6NJ_P0067401	RRM_5	PF13893.6	3.4e-13	1	2
MGP_C57BL6NJ_P0067401	RRM_5	PF13893.6	3.4e-13	2	2
MGP_C57BL6NJ_P0067402	RRM_5	PF13893.6	3.6e-13	1	2
MGP_C57BL6NJ_P0067402	RRM_5	PF13893.6	3.6e-13	2	2
MGP_C57BL6NJ_P0067403	RRM_5	PF13893.6	4e-13	1	2
MGP_C57BL6NJ_P0067403	RRM_5	PF13893.6	4e-13	2	2
MGP_C57BL6NJ_P0067405	RRM_5	PF13893.6	4e-13	1	2
MGP_C57BL6NJ_P0067405	RRM_5	PF13893.6	4e-13	2	2
MGP_C57BL6NJ_P0067404	RRM_1	PF00076.22	2.1e-65	1	3
MGP_C57BL6NJ_P0067404	RRM_1	PF00076.22	2.1e-65	2	3
MGP_C57BL6NJ_P0067404	RRM_1	PF00076.22	2.1e-65	3	3
MGP_C57BL6NJ_P0067400	RRM_1	PF00076.22	2.4e-65	1	3
MGP_C57BL6NJ_P0067400	RRM_1	PF00076.22	2.4e-65	2	3
MGP_C57BL6NJ_P0067400	RRM_1	PF00076.22	2.4e-65	3	3
MGP_C57BL6NJ_P0067399	RRM_1	PF00076.22	2.4e-65	1	3
MGP_C57BL6NJ_P0067399	RRM_1	PF00076.22	2.4e-65	2	3
MGP_C57BL6NJ_P0067399	RRM_1	PF00076.22	2.4e-65	3	3
MGP_C57BL6NJ_P0067401	RRM_1	PF00076.22	2.5e-65	1	3
MGP_C57BL6NJ_P0067401	RRM_1	PF00076.22	2.5e-65	2	3
MGP_C57BL6NJ_P0067401	RRM_1	PF00076.22	2.5e-65	3	3
MGP_C57BL6NJ_P0067402	RRM_1	PF00076.22	2.9e-65	1	3
MGP_C57BL6NJ_P0067402	RRM_1	PF00076.22	2.9e-65	2	3
MGP_C57BL6NJ_P0067402	RRM_1	PF00076.22	2.9e-65	3	3
MGP_C57BL6NJ_P0067403	RRM_1	PF00076.22	2.9e-65	1	3
MGP_C57BL6NJ_P0067403	RRM_1	PF00076.22	2.9e-65	2	3
MGP_C57BL6NJ_P0067403	RRM_1	PF00076.22	2.9e-65	3	3
MGP_C57BL6NJ_P0067405	RRM_1	PF00076.22	3e-65	1	3
MGP_C57BL6NJ_P0067405	RRM_1	PF00076.22	3e-65	2	3
MGP_C57BL6NJ_P0067405	RRM_1	PF00076.22	3e-65	3	3
MGP_C57BL6NJ_P0067407	RRM_1	PF00076.22	1.2e-20	1	1
MGP_C57BL6NJ_P0067409	RRM_1	PF00076.22	6.9e-13	1	1
MGP_C57BL6NJ_P0067410	RRM_1	PF00076.22	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0067410	-	488	-	MGP_C57BL6NJ_P0067410	92 (aa)	-	-
MGP_C57BL6NJ_T0067407	-	644	-	MGP_C57BL6NJ_P0067407	137 (aa)	-	-
MGP_C57BL6NJ_T0067406	-	869	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0067405	-	4149	-	MGP_C57BL6NJ_P0067405	385 (aa)	-	-
MGP_C57BL6NJ_T0067404	-	3761	-	MGP_C57BL6NJ_P0067404	356 (aa)	-	-
MGP_C57BL6NJ_T0067403	-	3799	-	MGP_C57BL6NJ_P0067403	383 (aa)	-	-
MGP_C57BL6NJ_T0067402	-	4024	-	MGP_C57BL6NJ_P0067402	380 (aa)	-	-
MGP_C57BL6NJ_T0067401	-	4107	-	MGP_C57BL6NJ_P0067401	371 (aa)	-	-
MGP_C57BL6NJ_T0067400	-	3775	-	MGP_C57BL6NJ_P0067400	366 (aa)	-	-
MGP_C57BL6NJ_T0067409	-	663	-	MGP_C57BL6NJ_P0067409	94 (aa)	-	-
MGP_C57BL6NJ_T0067399	-	3997	XM_006502793	MGP_C57BL6NJ_P0067399	366 (aa)	XP_006502856	Q61701
MGP_C57BL6NJ_T0067408	-	464	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0028998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0028998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0028998	Elavl4	61	30.120	MGP_C57BL6NJ_G0025086	Rbm4	52	30.120
MGP_C57BL6NJ_G0028998	Elavl4	89	73.585	MGP_C57BL6NJ_G0033826	Elavl1	98	73.585
MGP_C57BL6NJ_G0028998	Elavl4	94	35.897	MGP_C57BL6NJ_G0031411	Tia1	98	32.895
MGP_C57BL6NJ_G0028998	Elavl4	74	33.708	MGP_C57BL6NJ_G0036247	Rbmx	86	33.708
MGP_C57BL6NJ_G0028998	Elavl4	74	37.500	MGP_C57BL6NJ_G0017954	Celf5	89	30.120
MGP_C57BL6NJ_G0028998	Elavl4	70	36.458	MGP_C57BL6NJ_G0026182	Rbms1	53	32.773
MGP_C57BL6NJ_G0028998	Elavl4	70	38.889	MGP_C57BL6NJ_G0017880	Cirbp	84	38.889
MGP_C57BL6NJ_G0028998	Elavl4	66	42.373	MGP_C57BL6NJ_G0017886	Dazap1	64	30.275
MGP_C57BL6NJ_G0028998	Elavl4	70	35.484	MGP_C57BL6NJ_G0027608	Pabpc4l	96	30.065
MGP_C57BL6NJ_G0028998	Elavl4	88	34.940	MGP_C57BL6NJ_G0024778	Pabpc2	59	34.940
MGP_C57BL6NJ_G0028998	Elavl4	88	38.272	MGP_C57BL6NJ_G0024616	Celf4	91	35.802
MGP_C57BL6NJ_G0028998	Elavl4	87	32.759	MGP_C57BL6NJ_G0029162	Pabpc4	58	32.759
MGP_C57BL6NJ_G0028998	Elavl4	70	36.458	MGP_C57BL6NJ_G0035900	Rbms3	83	37.097
MGP_C57BL6NJ_G0028998	Elavl4	54	33.784	MGP_C57BL6NJ_G0028042	Rbm8a	62	30.693
MGP_C57BL6NJ_G0028998	Elavl4	72	35.821	MGP_C57BL6NJ_G0031158	Tra2a	59	37.097
MGP_C57BL6NJ_G0028998	Elavl4	92	36.667	MGP_C57BL6NJ_G0028025	Sf3b4	59	36.986
MGP_C57BL6NJ_G0028998	Elavl4	58	31.646	MGP_C57BL6NJ_G0036039	Rbm3	61	35.366
MGP_C57BL6NJ_G0028998	Elavl4	98	81.994	MGP_C57BL6NJ_G0034964	Elavl3	100	82.271
MGP_C57BL6NJ_G0028998	Elavl4	88	32.468	MGP_C57BL6NJ_G0023550	Pabpc6	60	32.468
MGP_C57BL6NJ_G0028998	Elavl4	85	40.741	MGP_C57BL6NJ_G0027972	Celf3	61	40.741
MGP_C57BL6NJ_G0028998	Elavl4	85	40.741	MGP_C57BL6NJ_G0035394	Celf6	95	35.802
MGP_C57BL6NJ_G0028998	Elavl4	88	35.897	MGP_C57BL6NJ_G0033576	Tial1	73	35.897
MGP_C57BL6NJ_G0028998	Elavl4	78	30.088	MGP_C57BL6NJ_G0019317	Msi2	84	30.208
MGP_C57BL6NJ_G0028998	Elavl4	81	38.272	MGP_C57BL6NJ_G0025747	Celf2	61	38.272
MGP_C57BL6NJ_G0028998	Elavl4	78	40.741	MGP_C57BL6NJ_G0026558	Celf1	62	40.741
MGP_C57BL6NJ_G0028998	Elavl4	90	31.677	MGP_C57BL6NJ_G0028476	-	61	31.677
MGP_C57BL6NJ_G0028998	Elavl4	57	37.037	MGP_C57BL6NJ_G0030526	Snrnp35	59	33.803
MGP_C57BL6NJ_G0028998	Elavl4	88	36.145	MGP_C57BL6NJ_G0022203	Pabpc1	58	36.145
MGP_C57BL6NJ_G0028998	Elavl4	99	89.315	MGP_C57BL6NJ_G0028865	Elavl2	100	89.751
MGP_C57BL6NJ_G0028998	Elavl4	89	33.735	MGP_C57BL6NJ_G0027257	Pabpc1l	67	33.735