EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0068106	PABP	PF00658.18	2.5e-31	1	1
MGP_C57BL6NJ_P0068102	PABP	PF00658.18	2.7e-31	1	1
MGP_C57BL6NJ_P0068103	PABP	PF00658.18	2.8e-31	1	1
MGP_C57BL6NJ_P0068106	RRM_5	PF13893.6	8.6e-09	1	2
MGP_C57BL6NJ_P0068106	RRM_5	PF13893.6	8.6e-09	2	2
MGP_C57BL6NJ_P0068102	RRM_5	PF13893.6	1.1e-08	1	2
MGP_C57BL6NJ_P0068102	RRM_5	PF13893.6	1.1e-08	2	2
MGP_C57BL6NJ_P0068103	RRM_5	PF13893.6	1.2e-08	1	1
MGP_C57BL6NJ_P0068106	RRM_1	PF00076.22	9e-76	1	4
MGP_C57BL6NJ_P0068106	RRM_1	PF00076.22	9e-76	2	4
MGP_C57BL6NJ_P0068106	RRM_1	PF00076.22	9e-76	3	4
MGP_C57BL6NJ_P0068106	RRM_1	PF00076.22	9e-76	4	4
MGP_C57BL6NJ_P0068102	RRM_1	PF00076.22	1e-75	1	4
MGP_C57BL6NJ_P0068102	RRM_1	PF00076.22	1e-75	2	4
MGP_C57BL6NJ_P0068102	RRM_1	PF00076.22	1e-75	3	4
MGP_C57BL6NJ_P0068102	RRM_1	PF00076.22	1e-75	4	4
MGP_C57BL6NJ_P0068103	RRM_1	PF00076.22	1.2e-75	1	4
MGP_C57BL6NJ_P0068103	RRM_1	PF00076.22	1.2e-75	2	4
MGP_C57BL6NJ_P0068103	RRM_1	PF00076.22	1.2e-75	3	4
MGP_C57BL6NJ_P0068103	RRM_1	PF00076.22	1.2e-75	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0068103	-	2977	-	MGP_C57BL6NJ_P0068103	599 (aa)	-	-
MGP_C57BL6NJ_T0068102	-	3037	-	MGP_C57BL6NJ_P0068102	586 (aa)	-	-
MGP_C57BL6NJ_T0068101	-	245	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0068107	-	692	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0068106	-	2627	-	MGP_C57BL6NJ_P0068106	570 (aa)	-	-
MGP_C57BL6NJ_T0068105	-	2945	-	MGP_C57BL6NJ_P0068105	635 (aa)	-	-
MGP_C57BL6NJ_T0068104	-	3092	-	MGP_C57BL6NJ_P0068104	143 (aa)	-	-
MGP_C57BL6NJ_T0068108	-	1146	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0029162	Pabpc4	53	37.113	MGP_C57BL6NJ_G0035394	Celf6	68	37.113
MGP_C57BL6NJ_G0029162	Pabpc4	51	37.500	MGP_C57BL6NJ_G0024616	Celf4	57	37.500
MGP_C57BL6NJ_G0029162	Pabpc4	99	66.724	MGP_C57BL6NJ_G0024778	Pabpc2	98	66.610
MGP_C57BL6NJ_G0029162	Pabpc4	100	93.554	MGP_C57BL6NJ_G0028476	-	99	93.554
MGP_C57BL6NJ_G0029162	Pabpc4	51	37.500	MGP_C57BL6NJ_G0025747	Celf2	59	37.500
MGP_C57BL6NJ_G0029162	Pabpc4	58	33.621	MGP_C57BL6NJ_G0033826	Elavl1	95	33.621
MGP_C57BL6NJ_G0029162	Pabpc4	58	40.816	MGP_C57BL6NJ_G0028025	Sf3b4	57	33.929
MGP_C57BL6NJ_G0029162	Pabpc4	59	65.432	MGP_C57BL6NJ_G0036541	Pabpc5	94	65.432
MGP_C57BL6NJ_G0029162	Pabpc4	99	67.000	MGP_C57BL6NJ_G0023550	Pabpc6	99	67.340
MGP_C57BL6NJ_G0029162	Pabpc4	57	30.201	MGP_C57BL6NJ_G0033576	Tial1	78	30.769
MGP_C57BL6NJ_G0029162	Pabpc4	98	77.320	MGP_C57BL6NJ_G0022203	Pabpc1	98	77.342
MGP_C57BL6NJ_G0029162	Pabpc4	53	38.710	MGP_C57BL6NJ_G0017954	Celf5	65	38.710
MGP_C57BL6NJ_G0029162	Pabpc4	59	32.759	MGP_C57BL6NJ_G0028865	Elavl2	89	34.940
MGP_C57BL6NJ_G0029162	Pabpc4	58	32.759	MGP_C57BL6NJ_G0028998	Elavl4	87	32.759
MGP_C57BL6NJ_G0029162	Pabpc4	60	31.034	MGP_C57BL6NJ_G0034964	Elavl3	93	33.735
MGP_C57BL6NJ_G0029162	Pabpc4	53	38.636	MGP_C57BL6NJ_G0026558	Celf1	70	38.636
MGP_C57BL6NJ_G0029162	Pabpc4	63	67.969	MGP_C57BL6NJ_G0027608	Pabpc4l	98	67.969
MGP_C57BL6NJ_G0029162	Pabpc4	81	61.216	MGP_C57BL6NJ_G0027257	Pabpc1l	74	70.000