EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0029214 (Gene tree)
Gene ID: -
Gene Symbol: Sfpq
Alias: 1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|Psf|REP1
Full Name: splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 17172 bases
Position: chr4:133634595-133651766
Accession: 1918764
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0068325	RRM_1	PF00076.22	6e-30	1	2
MGP_C57BL6NJ_P0068325	RRM_1	PF00076.22	6e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0068329	-	967	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0068328	-	600	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0068327	-	925	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0068326	-	755	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0068325	-	3465	-	MGP_C57BL6NJ_P0068325	699 (aa)	-	Q8VIJ6
MGP_C57BL6NJ_T0068330	-	644	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0029214	Sfpq	55	65.891	MGP_C57BL6NJ_G0021799	Pspc1	84	71.429