EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0029332 (Gene tree)
Gene ID: -
Gene Symbol: Lin28a
Alias: AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Lin28a|Tex17|lin-28A
Full Name: lin-28 homolog A (C. elegans)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 17851 bases
Position: chr4:141236778-141254628
Accession: 1890546
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0068896	CSD	PF00313.22	2.9e-16	1	1
MGP_C57BL6NJ_P0068899	CSD	PF00313.22	2.6e-12	1	1
MGP_C57BL6NJ_P0068898	CSD	PF00313.22	7.5e-05	1	1
MGP_C57BL6NJ_P0068897	CSD	PF00313.22	7.9e-05	1	1
MGP_C57BL6NJ_P0068896	zf-CCHC	PF00098.23	7e-08	1	1
MGP_C57BL6NJ_P0068897	zf-CCHC	PF00098.23	1.8e-05	1	1
MGP_C57BL6NJ_P0068898	zf-CCHC	PF00098.23	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0068899	-	478	-	MGP_C57BL6NJ_P0068899	75 (aa)	-	-
MGP_C57BL6NJ_T0068898	-	484	-	MGP_C57BL6NJ_P0068898	81 (aa)	-	-
MGP_C57BL6NJ_T0068897	-	394	-	MGP_C57BL6NJ_P0068897	83 (aa)	-	-
MGP_C57BL6NJ_T0068896	-	3128	XM_011250361	MGP_C57BL6NJ_P0068896	209 (aa)	XP_011248663	Q8K3Y3

Gene Model

Click here to download MGP_C57BL6NJ_G0029332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0029332's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0029332	Lin28a	100	82.667	MGP_C57BL6NJ_G0017604	Lin28b	66	69.444