EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0029389 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 84389 bases
Position: chr4:143797244-143881632
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0069146	RRM_1	PF00076.22	2.3e-43	1	3
MGP_C57BL6NJ_P0069146	RRM_1	PF00076.22	2.3e-43	2	3
MGP_C57BL6NJ_P0069146	RRM_1	PF00076.22	2.3e-43	3	3
MGP_C57BL6NJ_P0069149	RRM_1	PF00076.22	2.3e-43	1	3
MGP_C57BL6NJ_P0069149	RRM_1	PF00076.22	2.3e-43	2	3
MGP_C57BL6NJ_P0069149	RRM_1	PF00076.22	2.3e-43	3	3
MGP_C57BL6NJ_P0069147	RRM_1	PF00076.22	3.4e-43	1	3
MGP_C57BL6NJ_P0069147	RRM_1	PF00076.22	3.4e-43	2	3
MGP_C57BL6NJ_P0069147	RRM_1	PF00076.22	3.4e-43	3	3
MGP_C57BL6NJ_P0069148	RRM_1	PF00076.22	3.4e-43	1	3
MGP_C57BL6NJ_P0069148	RRM_1	PF00076.22	3.4e-43	2	3
MGP_C57BL6NJ_P0069148	RRM_1	PF00076.22	3.4e-43	3	3
MGP_C57BL6NJ_P0069152	RRM_1	PF00076.22	5.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0069146	-	2543	-	MGP_C57BL6NJ_P0069146	531 (aa)	-	-
MGP_C57BL6NJ_T0069147	-	21435	-	MGP_C57BL6NJ_P0069147	632 (aa)	-	-
MGP_C57BL6NJ_T0069148	-	2683	-	MGP_C57BL6NJ_P0069148	632 (aa)	-	-
MGP_C57BL6NJ_T0069149	-	2647	-	MGP_C57BL6NJ_P0069149	531 (aa)	-	-
MGP_C57BL6NJ_T0069153	-	292	-	MGP_C57BL6NJ_P0069153	73 (aa)	-	-
MGP_C57BL6NJ_T0069152	-	980	-	MGP_C57BL6NJ_P0069152	270 (aa)	-	-
MGP_C57BL6NJ_T0069151	-	576	-	MGP_C57BL6NJ_P0069151	72 (aa)	-	-
MGP_C57BL6NJ_T0069150	-	859	-	MGP_C57BL6NJ_P0069150	103 (aa)	-	-
MGP_C57BL6NJ_T0069156	-	1919	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069155	-	3948	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069154	-	473	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0029389's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0029389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0029389	-	59	52.997	MGP_C57BL6NJ_G0025454	A1cf	51	53.896
MGP_C57BL6NJ_G0029389	-	57	37.908	MGP_C57BL6NJ_G0024697	Dnd1	62	33.040
MGP_C57BL6NJ_G0029389	-	99	87.156	MGP_C57BL6NJ_G0035602	Syncrip	99	81.552
MGP_C57BL6NJ_G0029389	-	59	56.329	MGP_C57BL6NJ_G0027748	Rbm46	65	56.774
MGP_C57BL6NJ_G0029389	-	85	45.815	MGP_C57BL6NJ_G0030018	Rbm47	88	59.859