EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0029559 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 18716 bases
Position: chr4:157878724-157897439
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0069765	RRM_1	PF00076.22	1.2e-26	1	2
MGP_C57BL6NJ_P0069765	RRM_1	PF00076.22	1.2e-26	2	2
MGP_C57BL6NJ_P0069758	RRM_1	PF00076.22	4.4e-26	1	2
MGP_C57BL6NJ_P0069758	RRM_1	PF00076.22	4.4e-26	2	2
MGP_C57BL6NJ_P0069743	RRM_1	PF00076.22	4.5e-26	1	2
MGP_C57BL6NJ_P0069743	RRM_1	PF00076.22	4.5e-26	2	2
MGP_C57BL6NJ_P0069762	RRM_1	PF00076.22	4.5e-26	1	2
MGP_C57BL6NJ_P0069762	RRM_1	PF00076.22	4.5e-26	2	2
MGP_C57BL6NJ_P0069742	RRM_1	PF00076.22	4.8e-26	1	2
MGP_C57BL6NJ_P0069742	RRM_1	PF00076.22	4.8e-26	2	2
MGP_C57BL6NJ_P0069764	RRM_1	PF00076.22	4.8e-26	1	2
MGP_C57BL6NJ_P0069764	RRM_1	PF00076.22	4.8e-26	2	2
MGP_C57BL6NJ_P0069740	RRM_1	PF00076.22	4.9e-26	1	2
MGP_C57BL6NJ_P0069740	RRM_1	PF00076.22	4.9e-26	2	2
MGP_C57BL6NJ_P0069763	RRM_1	PF00076.22	4.9e-26	1	2
MGP_C57BL6NJ_P0069763	RRM_1	PF00076.22	4.9e-26	2	2
MGP_C57BL6NJ_P0069741	RRM_1	PF00076.22	1.2e-25	1	2
MGP_C57BL6NJ_P0069741	RRM_1	PF00076.22	1.2e-25	2	2
MGP_C57BL6NJ_P0069767	RRM_1	PF00076.22	4.1e-15	1	1
MGP_C57BL6NJ_P0069768	RRM_1	PF00076.22	5e-11	1	1
MGP_C57BL6NJ_P0069759	RRM_1	PF00076.22	6.6e-09	1	1
MGP_C57BL6NJ_P0069761	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0069742	-	6513	-	MGP_C57BL6NJ_P0069742	304 (aa)	-	-
MGP_C57BL6NJ_T0069743	-	6495	-	MGP_C57BL6NJ_P0069743	298 (aa)	-	-
MGP_C57BL6NJ_T0069740	-	6425	XM_011250237	MGP_C57BL6NJ_P0069740	302 (aa)	XP_011248539	Q921F2
MGP_C57BL6NJ_T0069741	-	7477	-	MGP_C57BL6NJ_P0069741	414 (aa)	-	-
MGP_C57BL6NJ_T0069746	-	529	-	MGP_C57BL6NJ_P0069746	98 (aa)	-	-
MGP_C57BL6NJ_T0069747	-	676	-	MGP_C57BL6NJ_P0069747	88 (aa)	-	-
MGP_C57BL6NJ_T0069744	-	1773	-	MGP_C57BL6NJ_P0069744	298 (aa)	-	-
MGP_C57BL6NJ_T0069745	-	731	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069760	-	814	-	MGP_C57BL6NJ_P0069760	19 (aa)	-	-
MGP_C57BL6NJ_T0069761	-	748	-	MGP_C57BL6NJ_P0069761	84 (aa)	-	-
MGP_C57BL6NJ_T0069748	-	908	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069749	-	629	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069764	-	1011	-	MGP_C57BL6NJ_P0069764	304 (aa)	-	-
MGP_C57BL6NJ_T0069765	-	709	-	MGP_C57BL6NJ_P0069765	199 (aa)	-	-
MGP_C57BL6NJ_T0069766	-	1411	-	MGP_C57BL6NJ_P0069766	84 (aa)	-	-
MGP_C57BL6NJ_T0069767	-	818	-	MGP_C57BL6NJ_P0069767	243 (aa)	-	-
MGP_C57BL6NJ_T0069769	-	370	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069763	-	923	-	MGP_C57BL6NJ_P0069763	302 (aa)	-	-
MGP_C57BL6NJ_T0069762	-	1096	-	MGP_C57BL6NJ_P0069762	298 (aa)	-	-
MGP_C57BL6NJ_T0069751	-	2006	-	MGP_C57BL6NJ_P0069751	298 (aa)	-	-
MGP_C57BL6NJ_T0069750	-	358	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0069753	-	741	-	MGP_C57BL6NJ_P0069753	175 (aa)	-	-
MGP_C57BL6NJ_T0069752	-	1011	-	MGP_C57BL6NJ_P0069752	34 (aa)	-	-
MGP_C57BL6NJ_T0069755	-	684	-	MGP_C57BL6NJ_P0069755	137 (aa)	-	-
MGP_C57BL6NJ_T0069754	-	781	-	MGP_C57BL6NJ_P0069754	140 (aa)	-	-
MGP_C57BL6NJ_T0069757	-	517	-	MGP_C57BL6NJ_P0069757	77 (aa)	-	-
MGP_C57BL6NJ_T0069756	-	1304	-	MGP_C57BL6NJ_P0069756	285 (aa)	-	-
MGP_C57BL6NJ_T0069759	-	570	-	MGP_C57BL6NJ_P0069759	128 (aa)	-	-
MGP_C57BL6NJ_T0069758	-	1904	-	MGP_C57BL6NJ_P0069758	295 (aa)	-	-
MGP_C57BL6NJ_T0069768	-	740	-	MGP_C57BL6NJ_P0069768	149 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0029559's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0029559's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0029559	Tardbp	79	31.818	MGP_C57BL6NJ_G0019317	Msi2	100	35.398
MGP_C57BL6NJ_G0029559	Tardbp	94	30.282	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	66	30.348
MGP_C57BL6NJ_G0029559	Tardbp	77	38.194	MGP_C57BL6NJ_G0030211	Hnrnpd	100	64.000
MGP_C57BL6NJ_G0029559	Tardbp	77	31.447	MGP_C57BL6NJ_G0030213	Hnrnpdl	64	30.000
MGP_C57BL6NJ_G0029559	Tardbp	79	34.021	MGP_C57BL6NJ_G0030399	Msi1	62	34.021
MGP_C57BL6NJ_G0029559	Tardbp	86	33.146	MGP_C57BL6NJ_G0018659	Hnrnpab	82	32.099
MGP_C57BL6NJ_G0029559	Tardbp	72	38.806	MGP_C57BL6NJ_G0033826	Elavl1	59	31.481
MGP_C57BL6NJ_G0029559	Tardbp	92	35.000	MGP_C57BL6NJ_G0036247	Rbmx	78	35.000
MGP_C57BL6NJ_G0029559	Tardbp	88	31.818	MGP_C57BL6NJ_G0017886	Dazap1	89	35.065