EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0029611 (Gene tree)
Gene ID: -
Gene Symbol: Chd5
Alias: 4930532L22Rik|AW060752|B230399N07Rik|CHD-5|Kiaa0444
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 59901 bases
Position: chr4:162069111-162129011
Accession: 3036258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0070045	ResIII	PF04851.15	2.4e-07	1	1
MGP_C57BL6NJ_P0070047	ResIII	PF04851.15	2.5e-07	1	1
MGP_C57BL6NJ_P0070046	ResIII	PF04851.15	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0070047	-	9122	-	MGP_C57BL6NJ_P0070047	1946 (aa)	-	-
MGP_C57BL6NJ_T0070046	-	9486	-	MGP_C57BL6NJ_P0070046	1952 (aa)	-	-
MGP_C57BL6NJ_T0070045	-	9375	XM_006538929	MGP_C57BL6NJ_P0070045	1915 (aa)	XP_006538992	A2A8L1
MGP_C57BL6NJ_T0070049	-	6245	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0070048	-	280	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0029611's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0029611's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0029611	Chd5	51	34.657	MGP_C57BL6NJ_G0027234	Chd6	66	36.621
MGP_C57BL6NJ_G0029611	Chd5	91	73.153	MGP_C57BL6NJ_G0031719	Chd4	96	72.421
MGP_C57BL6NJ_G0029611	Chd5	97	70.202	MGP_C57BL6NJ_G0018920	Chd3	95	71.160