EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0030211 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 22917 bases
Position: chr5:105647335-105670251
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0073261	RRM_1	PF00076.22	6.2e-36	1	2
MGP_C57BL6NJ_P0073261	RRM_1	PF00076.22	6.2e-36	2	2
MGP_C57BL6NJ_P0073259	RRM_1	PF00076.22	7.7e-36	1	2
MGP_C57BL6NJ_P0073259	RRM_1	PF00076.22	7.7e-36	2	2
MGP_C57BL6NJ_P0073260	RRM_1	PF00076.22	1e-35	1	2
MGP_C57BL6NJ_P0073260	RRM_1	PF00076.22	1e-35	2	2
MGP_C57BL6NJ_P0073258	RRM_1	PF00076.22	1.2e-35	1	2
MGP_C57BL6NJ_P0073258	RRM_1	PF00076.22	1.2e-35	2	2
MGP_C57BL6NJ_P0073267	RRM_1	PF00076.22	2.3e-23	1	1
MGP_C57BL6NJ_P0073268	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0073268	-	433	-	MGP_C57BL6NJ_P0073268	25 (aa)	-	-
MGP_C57BL6NJ_T0073262	-	1117	-	MGP_C57BL6NJ_P0073262	215 (aa)	-	-
MGP_C57BL6NJ_T0073263	-	737	-	MGP_C57BL6NJ_P0073263	150 (aa)	-	-
MGP_C57BL6NJ_T0073260	-	1625	-	MGP_C57BL6NJ_P0073260	321 (aa)	-	-
MGP_C57BL6NJ_T0073261	-	1492	-	MGP_C57BL6NJ_P0073261	272 (aa)	-	-
MGP_C57BL6NJ_T0073266	-	425	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0073267	-	448	-	MGP_C57BL6NJ_P0073267	107 (aa)	-	-
MGP_C57BL6NJ_T0073264	-	699	-	MGP_C57BL6NJ_P0073264	131 (aa)	-	-
MGP_C57BL6NJ_T0073265	-	1059	-	MGP_C57BL6NJ_P0073265	71 (aa)	-	-
MGP_C57BL6NJ_T0073259	-	1955	-	MGP_C57BL6NJ_P0073259	291 (aa)	-	-
MGP_C57BL6NJ_T0073258	-	6764	XM_006534735	MGP_C57BL6NJ_P0073258	340 (aa)	XP_006534798	Q60668

Gene Model

Click here to download MGP_C57BL6NJ_G0030211's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0030211's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0030211	Hnrnpd	100	88.000	MGP_C57BL6NJ_G0018659	Hnrnpab	77	70.183
MGP_C57BL6NJ_G0030211	Hnrnpd	69	35.294	MGP_C57BL6NJ_G0016426	Boll	50	35.294
MGP_C57BL6NJ_G0030211	Hnrnpd	51	36.364	MGP_C57BL6NJ_G0027375	Rbm38	52	42.857
MGP_C57BL6NJ_G0030211	Hnrnpd	84	36.559	MGP_C57BL6NJ_G0017880	Cirbp	83	37.755
MGP_C57BL6NJ_G0030211	Hnrnpd	100	56.000	MGP_C57BL6NJ_G0017886	Dazap1	98	41.935
MGP_C57BL6NJ_G0030211	Hnrnpd	70	32.000	MGP_C57BL6NJ_G0028865	Elavl2	61	30.000
MGP_C57BL6NJ_G0030211	Hnrnpd	57	31.884	MGP_C57BL6NJ_G0030526	Snrnp35	51	35.484
MGP_C57BL6NJ_G0030211	Hnrnpd	70	34.667	MGP_C57BL6NJ_G0036039	Rbm3	92	36.508
MGP_C57BL6NJ_G0030211	Hnrnpd	84	37.363	MGP_C57BL6NJ_G0036247	Rbmx	82	43.750
MGP_C57BL6NJ_G0030211	Hnrnpd	100	68.000	MGP_C57BL6NJ_G0030399	Msi1	59	49.485
MGP_C57BL6NJ_G0030211	Hnrnpd	100	37.838	MGP_C57BL6NJ_G0021011	Hnrnpa0	86	34.173
MGP_C57BL6NJ_G0030211	Hnrnpd	55	35.593	MGP_C57BL6NJ_G0031411	Tia1	69	38.462
MGP_C57BL6NJ_G0030211	Hnrnpd	100	80.000	MGP_C57BL6NJ_G0030213	Hnrnpdl	87	64.599
MGP_C57BL6NJ_G0030211	Hnrnpd	71	33.333	MGP_C57BL6NJ_G0020377	Slirp	70	33.333
MGP_C57BL6NJ_G0030211	Hnrnpd	100	72.000	MGP_C57BL6NJ_G0019317	Msi2	100	53.982
MGP_C57BL6NJ_G0030211	Hnrnpd	100	64.000	MGP_C57BL6NJ_G0029559	Tardbp	77	38.194
MGP_C57BL6NJ_G0030211	Hnrnpd	97	44.545	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	72	41.148
MGP_C57BL6NJ_G0030211	Hnrnpd	95	45.370	MGP_C57BL6NJ_G0026275	Hnrnpa3	60	41.748
MGP_C57BL6NJ_G0030211	Hnrnpd	100	32.432	MGP_C57BL6NJ_G0028025	Sf3b4	53	30.714