EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0030274 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: AW495828|Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 10327 bases
Position: chr5:114253458-114263784
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0073556	zf-C2H2	PF00096.26	5e-28	1	6
MGP_C57BL6NJ_P0073556	zf-C2H2	PF00096.26	5e-28	2	6
MGP_C57BL6NJ_P0073556	zf-C2H2	PF00096.26	5e-28	3	6
MGP_C57BL6NJ_P0073556	zf-C2H2	PF00096.26	5e-28	4	6
MGP_C57BL6NJ_P0073556	zf-C2H2	PF00096.26	5e-28	5	6
MGP_C57BL6NJ_P0073556	zf-C2H2	PF00096.26	5e-28	6	6
MGP_C57BL6NJ_P0073557	zf-C2H2	PF00096.26	5e-28	1	6
MGP_C57BL6NJ_P0073557	zf-C2H2	PF00096.26	5e-28	2	6
MGP_C57BL6NJ_P0073557	zf-C2H2	PF00096.26	5e-28	3	6
MGP_C57BL6NJ_P0073557	zf-C2H2	PF00096.26	5e-28	4	6
MGP_C57BL6NJ_P0073557	zf-C2H2	PF00096.26	5e-28	5	6
MGP_C57BL6NJ_P0073557	zf-C2H2	PF00096.26	5e-28	6	6
MGP_C57BL6NJ_P0073558	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_C57BL6NJ_P0073558	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_C57BL6NJ_P0073558	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_C57BL6NJ_P0073558	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_C57BL6NJ_P0073558	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_C57BL6NJ_P0073558	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_C57BL6NJ_P0073559	zf-C2H2	PF00096.26	9.5e-25	1	4
MGP_C57BL6NJ_P0073559	zf-C2H2	PF00096.26	9.5e-25	2	4
MGP_C57BL6NJ_P0073559	zf-C2H2	PF00096.26	9.5e-25	3	4
MGP_C57BL6NJ_P0073559	zf-C2H2	PF00096.26	9.5e-25	4	4
MGP_C57BL6NJ_P0073559	zf-met	PF12874.7	2.2e-08	1	1
MGP_C57BL6NJ_P0073556	zf-met	PF12874.7	2.5e-07	1	1
MGP_C57BL6NJ_P0073557	zf-met	PF12874.7	2.5e-07	1	1
MGP_C57BL6NJ_P0073558	zf-met	PF12874.7	4.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0073558	-	2639	-	MGP_C57BL6NJ_P0073558	489 (aa)	-	-
MGP_C57BL6NJ_T0073559	-	1482	-	MGP_C57BL6NJ_P0073559	135 (aa)	-	-
MGP_C57BL6NJ_T0073560	-	689	-	MGP_C57BL6NJ_P0073560	186 (aa)	-	-
MGP_C57BL6NJ_T0073556	-	2648	XM_006534791	MGP_C57BL6NJ_P0073556	423 (aa)	XP_006534854	A0A0R4J292
MGP_C57BL6NJ_T0073557	-	2860	-	MGP_C57BL6NJ_P0073557	423 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0030274's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0030274's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0030274	Gfi1	99	45.133	MGP_C57BL6NJ_G0031270	Prdm5	74	41.463
MGP_C57BL6NJ_G0030274	Gfi1	100	44.882	MGP_C57BL6NJ_G0032591	Zfp715	63	43.210
MGP_C57BL6NJ_G0030274	Gfi1	100	47.863	MGP_C57BL6NJ_G0027315	Zfp334	62	47.651
MGP_C57BL6NJ_G0030274	Gfi1	100	44.444	MGP_C57BL6NJ_G0023635	Zfp677	82	42.857
MGP_C57BL6NJ_G0030274	Gfi1	100	48.031	MGP_C57BL6NJ_G0021105	Zfp748	92	48.447
MGP_C57BL6NJ_G0030274	Gfi1	99	48.507	MGP_C57BL6NJ_G0026884	Zfp661	58	48.175
MGP_C57BL6NJ_G0030274	Gfi1	99	44.444	MGP_C57BL6NJ_G0032022	Zfp784	71	44.444
MGP_C57BL6NJ_G0030274	Gfi1	100	47.368	MGP_C57BL6NJ_G0027353	Zfp64	70	35.429
MGP_C57BL6NJ_G0030274	Gfi1	100	50.746	MGP_C57BL6NJ_G0034908	Zfp26	77	47.159
MGP_C57BL6NJ_G0030274	Gfi1	100	46.269	MGP_C57BL6NJ_G0023637	Zfp51	75	44.828
MGP_C57BL6NJ_G0030274	Gfi1	100	49.219	MGP_C57BL6NJ_G0029938	Zbtb49	62	51.786
MGP_C57BL6NJ_G0030274	Gfi1	100	46.739	MGP_C57BL6NJ_G0025014	Zfp236	54	46.739
MGP_C57BL6NJ_G0030274	Gfi1	100	54.321	MGP_C57BL6NJ_G0033526	Zfp768	51	45.833
MGP_C57BL6NJ_G0030274	Gfi1	99	47.222	MGP_C57BL6NJ_G0033529	Zfp747	68	41.212
MGP_C57BL6NJ_G0030274	Gfi1	99	45.038	MGP_C57BL6NJ_G0033528	E430018J23Rik	60	42.197
MGP_C57BL6NJ_G0030274	Gfi1	100	46.903	MGP_C57BL6NJ_G0021087	Rslcan18	72	42.045
MGP_C57BL6NJ_G0030274	Gfi1	99	39.683	MGP_C57BL6NJ_G0030303	4930522L14Rik	97	37.821
MGP_C57BL6NJ_G0030274	Gfi1	99	47.287	MGP_C57BL6NJ_G0031136	Repin1	90	47.287
MGP_C57BL6NJ_G0030274	Gfi1	100	44.030	MGP_C57BL6NJ_G0034971	Zfp872	80	41.477
MGP_C57BL6NJ_G0030274	Gfi1	100	45.522	MGP_C57BL6NJ_G0034261	Zfp709	88	43.976
MGP_C57BL6NJ_G0030274	Gfi1	100	48.031	MGP_C57BL6NJ_G0018653	Zfp354a	68	45.122
MGP_C57BL6NJ_G0030274	Gfi1	99	47.368	MGP_C57BL6NJ_G0032019	Zfp865	66	46.753
MGP_C57BL6NJ_G0030274	Gfi1	99	45.714	MGP_C57BL6NJ_G0032301	Zfp574	62	43.925
MGP_C57BL6NJ_G0030274	Gfi1	100	46.457	MGP_C57BL6NJ_G0032271	Zfp94	65	44.970
MGP_C57BL6NJ_G0030274	Gfi1	99	48.333	MGP_C57BL6NJ_G0020666	Zkscan4	57	48.333
MGP_C57BL6NJ_G0030274	Gfi1	100	42.857	MGP_C57BL6NJ_G0023666	Zscan10	77	42.771
MGP_C57BL6NJ_G0030274	Gfi1	100	46.094	MGP_C57BL6NJ_G0034262	Zfp882	85	44.048
MGP_C57BL6NJ_G0030274	Gfi1	100	39.535	MGP_C57BL6NJ_G0034479	Zfp319	93	40.116
MGP_C57BL6NJ_G0030274	Gfi1	100	43.846	MGP_C57BL6NJ_G0021088	Zfp759	89	43.846
MGP_C57BL6NJ_G0030274	Gfi1	100	49.254	MGP_C57BL6NJ_G0022420	Zfp251	74	47.024
MGP_C57BL6NJ_G0030274	Gfi1	100	46.457	MGP_C57BL6NJ_G0034637	Zfp1	60	43.478
MGP_C57BL6NJ_G0030274	Gfi1	100	45.238	MGP_C57BL6NJ_G0018791	Zfp867	79	43.023
MGP_C57BL6NJ_G0030274	Gfi1	100	50.000	MGP_C57BL6NJ_G0032267	Zfp111	73	46.591
MGP_C57BL6NJ_G0030274	Gfi1	100	48.031	MGP_C57BL6NJ_G0032266	Zfp235	61	46.377
MGP_C57BL6NJ_G0030274	Gfi1	100	43.590	MGP_C57BL6NJ_G0031616	Zfp637	71	43.590
MGP_C57BL6NJ_G0030274	Gfi1	100	45.794	MGP_C57BL6NJ_G0018644	Zfp454	68	42.262
MGP_C57BL6NJ_G0030274	Gfi1	100	48.276	MGP_C57BL6NJ_G0018741	Zfp672	90	48.276